YRC Public Data Repository - Protein Structure Prediction

Protein:	TUSD_SHIFL
Organism:	Shigella flexneri
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUSD_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|253979330, gi... - gi\|254290023\|ref\|YP_003055771.1\| hypothetical protein ECD_03196 [Escherichia coli BL21(DE3)], gi\|253... TUSD_ECO8A - Sulfurtransferase TusD OS=Escherichia coli O8 (strain IAI1) GN=tusD PE=3 SV=1 gi\|242378871, gi... - gi\|251786598\|ref\|YP_003000902.1\| hypothetical protein B21_03147 [Escherichia coli BL21], gi\|24237887... TUSD_ECOSE - Sulfurtransferase TusD OS=Escherichia coli (strain SE11) GN=tusD PE=3 SV=1 gi\|253975174, gi... - gi\|254163273\|ref\|YP_003046381.1\| hypothetical protein ECB_03196 [Escherichia coli B str. REL606], gi... TUSD_ECOHS - Sulfurtransferase TusD OS=Escherichia coli O9:H4 (strain HS) GN=tusD PE=3 SV=1 TUSD_ECO24 - Sulfurtransferase TusD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tusD PE=3 SV=1	185.0	[0..1]	[128..1]
TUSD_SHISS - Sulfurtransferase TusD OS=Shigella sonnei (strain Ss046) GN=tusD PE=3 SV=1 gi\|188495980, gi... - gi\|75510631\|ref\|ZP_00733529.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	185.0	[0..1]	[128..1]
gi\|90109182, gi\|... - gi\|90109182\|pdb\|2D1P\|G Chain G, Crystal Structure Of Heterohexameric Tusbcd Proteins, Which Are Cruc...	184.0	[0..1]	[128..13]
YHEN_ECOL6, TUSD... - (Q8FCY1) UPF0163 protein yheN, Sulfurtransferase TusD OS=Escherichia coli O6 GN=tusD PE=3 SV=1 gi\|227839358, gi... - gi\|227883479\|ref\|ZP_04001284.1\| Dsr family protein DsrE [Escherichia coli 83972], gi\|227839358\|gb\|EE... gi\|237703076, gi... - gi\|237703076\|ref\|ZP_04533557.1\| sulfurtransferase tusD [Escherichia sp. 3_2_53FAA], gi\|226902340\|gb\|... TUSD_ECOL6 - Sulfurtransferase TusD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tusD PE=3 S... gi\|75241560, gi\|... - gi\|75241560\|ref\|ZP_00725405.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... TUSD_ECO45 - Sulfurtransferase TusD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tusD PE=3 SV=1 TUSD_ECOL5 - Sulfurtransferase TusD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tusD PE=3 SV=1 TUSD_ECOK1 - Sulfurtransferase TusD OS=Escherichia coli O1:K1 / APEC GN=tusD PE=3 SV=1 TUSD_ECOUT - Sulfurtransferase TusD OS=Escherichia coli (strain UTI89 / UPEC) GN=tusD PE=3 SV=1	183.0	[0..1]	[128..1]
TUSD_SHIBS - Sulfurtransferase TusD OS=Shigella boydii serotype 4 (strain Sb227) GN=tusD PE=3 SV=1 TUSD_SHIB3 - Sulfurtransferase TusD OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tusD PE=3 SV=1	183.0	[0..1]	[128..1]
TUSD_SHIDS - Sulfurtransferase TusD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tusD PE=3 SV=1	183.0	[0..1]	[128..1]
gi\|168765514, gi... - gi\|189364833\|gb\|EDU83249.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4501], gi\|168765... gi\|195934841 - gi\|195934841\|ref\|ZP_03080223.1\| hypothetical protein EscherichcoliO157_00015 [Escherichia coli O157:... gi\|168785153, gi... - gi\|189374261\|gb\|EDU92677.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC869], gi\|1687851... gi\|168784330, gi... - gi\|188998494\|gb\|EDU67486.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4076], gi\|168784... gi\|189361736, gi... - gi\|189361736\|gb\|EDU80155.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4486], gi\|168769... gi\|209756966, gi... - pir\|\|H85998 hypothetical protein yheN [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15833450, gi\|... - gi\|15833450\|ref\|NP_312223.1\| sulfur transfer complex subunit TusD [Escherichia coli O157:H7 str. Sak... gi\|15803858, gi\|... - gi\|15803858\|ref\|NP_289892.1\| hypothetical protein Z4703 [Escherichia coli O157:H7 EDL933], gi\|125179... TUSD_ECO57 - Sulfurtransferase TusD OS=Escherichia coli O157:H7 GN=tusD PE=3 SV=1 TUSD_ECO5E - Sulfurtransferase TusD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tusD PE=3 SV=1 gi\|208739245, gi... - gi\|208819122\|ref\|ZP_03259442.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|208812979, gi... - gi\|208812979\|ref\|ZP_03254308.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208726638, gi... - gi\|208806837\|ref\|ZP_03249174.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|254795268, gi... - gi\|254795268\|ref\|YP_003080105.1\| tRNA 2-thiouridine synthesizing protein, subunit of sulfur transfer... gi\|217322109, gi... - gi\|217325888\|ref\|ZP_03441972.1\| sulfurtransferase TusD [Escherichia coli O157:H7 str. TW14588], gi\|2...	182.0	[0..1]	[128..1]
gi\|254038507, gi... - gi\|254038507\|ref\|ZP_04872563.1\| sulfurtransferase tusD [Escherichia sp. 1_1_43], gi\|226839013\|gb\|EEH... YHEN_ECOLI, TUSD... - (P45532) UPF0163 protein yheN, Sulfurtransferase tusD (EC 2.8.1.-) (tRNA 2-thiouridine synthesizing ... gi\|124528120, gi... - gi\|124528120\|ref\|ZP_01699453.1\| DsrE family protein [Escherichia coli B], gi\|124500775\|gb\|EAY48244.1... EG12898 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis / mnm(5)-s(2)U34-tRNA 2-thi... gi\|89110665, gi\|... - gi\|89110665\|ref\|AP_004445.1\| predicted intracellular sulfur oxidation protein [Escherichia coli str.... EG12898 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis / mnm(5)-s(2)U34-tRNA 2-thi... TUSD_ECOLC - Sulfurtransferase TusD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tusD PE=3 SV=1 TUSD_ECODH - Sulfurtransferase TusD OS=Escherichia coli (strain K12 / DH10B) GN=tusD PE=3 SV=1 TUSD_ECOBW - Sulfurtransferase TusD OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=tusD PE=3 SV=1	182.0	[0..1]	[128..1]
Y426_PHOLL, TUSD... - (Q7N9B7) UPF0163 protein plu0426, Sulfurtransferase tusD OS=Photorhabdus luminescens subsp. laumondi... TUSD_PHOLL - Sulfurtransferase TusD OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 /...	182.0	[0..1]	[128..4]
gi\|192932692, gi... - gi\|75260365\|ref\|ZP_00731633.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|75207905 - gi\|75207905\|ref\|ZP_00708358.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	182.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAIVVTGP AYGTQQASSA FQFAQALIAE GHKLSSVFFY REGVYNANQL TSPASDEFDL  60
   61 VRGWQQLNAQ HGVALNICVA AALRRGIVDE TEAGRLGLAS SNLQPGFTLS GLGALAEASL 120
  121 TCDRVVQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	2d1pA
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits