YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56967269
Organism:	Escherichia coli
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56967269.

Description	E-value	Query Range	Subject Range
Y993_PYRAB - UPF0271 protein PYRAB09930 OS=Pyrococcus abyssi GN=PYRAB09930 PE=3 SV=1 Y993_PYRAB - UPF0271 protein PYRAB09930 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB09930 PE=3 SV=1	393.0	[0..2]	[246..2]
Y986_PYRHO - UPF0271 protein PH0986 OS=Pyrococcus horikoshii GN=PH0986 PE=1 SV=1 Y986_PYRHO - UPF0271 protein PH0986 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	390.0	[0..2]	[246..2]
YC72_PYRFU, Y127... - (Q8U1D7) Hypothetical UPF0271 protein PF1272, UPF0271 protein PF1272 OS=Pyrococcus furiosus GN=PF127... Y1272_PYRFU - UPF0271 protein PF1272 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1...	382.0	[0..2]	[245..2]
Y336_THEKO - UPF0271 protein TK0336 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK03... Y336_PYRKO - UPF0271 protein TK0336 OS=Pyrococcus kodakaraensis GN=TK0336 PE=3 SV=1	380.0	[0..2]	[246..2]
gi\|254974933 - gi\|254974933\|ref\|ZP_05271405.1\| LamB/YcsF family protein [Clostridium difficile QCD-66c26] gi\|255092322 - gi\|255092322\|ref\|ZP_05321800.1\| LamB/YcsF family protein [Clostridium difficile CIP 107932] gi\|255314060 - gi\|255314060\|ref\|ZP_05355643.1\| LamB/YcsF family protein [Clostridium difficile QCD-76w55] gi\|255516740 - gi\|255516740\|ref\|ZP_05384416.1\| LamB/YcsF family protein [Clostridium difficile QCD-97b34] gi\|145955127, gi... - gi\|90575297\|ref\|ZP_01231782.1\| hypothetical protein CdifQ_02001413 [Clostridium difficile QCD-32g58]... gi\|255649839 - gi\|255649839\|ref\|ZP_05396741.1\| LamB/YcsF family protein [Clostridium difficile QCD-37x79]	378.0	[0..2]	[246..3]
Y2759_CLOB8 - UPF0271 protein Cbei_2759 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=Cbei_2759 ...	378.0	[0..2]	[245..3]
Y1384_PEPD6 - UPF0271 protein CD630_13840 OS=Peptoclostridium difficile (strain 630) GN=CD630_13840 PE=3 SV=1 gi\|255100403 - gi\|255100403\|ref\|ZP_05329380.1\| LamB/YcsF family protein [Clostridium difficile QCD-63q42]	376.0	[0..2]	[246..3]
gi\|145845704, gi... - gi\|148925694\|ref\|ZP_01809382.1\| hypothetical protein Cj8486_1579 [Campylobacter jejuni subsp. jejuni... Y1541_CAMJE - UPF0271 protein Cj1541 OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC... gi\|88191040, gi\|... - gi\|88596199\|ref\|ZP_01099436.1\| LamB/YcsF family protein [Campylobacter jejuni subsp. jejuni 84-25], ... Y1541_CAMJE, YF4... - (Q9PMC8) Hypothetical UPF0271 protein Cj1541, UPF0271 protein Cj1541 OS=Campylobacter jejuni GN=Cj15... Y1526_CAMJJ - UPF0271 protein CJJ81176_1526 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)... gi\|85840223, gi\|... - gi\|86149441\|ref\|ZP_01067672.1\| LamB/YcsF family protein [Campylobacter jejuni subsp. jejuni CF93-6],...	375.0	[0..2]	[246..3]
Y2847_BACHK - UPF0271 protein BT9727_2847 OS=Bacillus thuringiensis subsp. konkukian GN=BT9727_2847 PE=3 SV=1 Y2847_BACHK - UPF0271 protein BT9727_2847 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=BT9727_2847...	375.0	[0..3]	[246..4]
Y1314_STAHJ - UPF0271 protein SH1314 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1314 PE=3 SV=1	374.0	[0..2]	[245..2]

Back

Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XKIDLNADLG EGCASDAELL TLVSSANIAC GFHAGDAQIX QACVREAIKN GVAIGAHPSF  60
   61 PDRENFGRSA XQLPPETVYA QTLYQIGALA TIARAQGGVX RHVKPHGXLY NQAAKEAQLA 120
  121 DAIARAVYAC DPALILVGLA GSELIRAGKQ YGLTTREEVF ADRGYQADGS LVPRSQSGAL 180
  181 IENEEQALAQ TLEXVQHGRV KSITGEWATV AAQTVCLHGD GEHALAFARR LRSAFAEKGI 240
  241 VVAALEHHHH HH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.39794
Match:	1xw8A
Description:	X-ray structure of putative lactam utilization protein YBGL. Northeast Structural Genomics Consortium target ET90.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.412391974836	bayes_pls_golite062009
hydrolase activity	0.333866445066122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: