YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60594388, gi\|...
Organism:	Pseudomonas aeruginosa
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60594388, gi|....

Description	E-value	Query Range	Subject Range
gi\|107100040 - gi\|107100040\|ref\|ZP_01363958.1\| hypothetical protein PaerPA_01001061 [Pseudomonas aeruginosa PACS2] gi\|254238961, gi... - gi\|84316914\|ref\|ZP_00965372.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi... gi\|254244814, gi... - gi\|84323093\|ref\|ZP_00971170.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi... gi\|218773695, gi... - gi\|218893467\|ref\|YP_002442336.1\| nicotinate phosphoribosyltransferase [Pseudomonas aeruginosa LESB58... PNB2_PSEAE, PNCB... - Nicotinate phosphoribosyltransferase 2 OS=Pseudomonas aeruginosa GN=pncB2 PE=1 SV=1, (Q9HW26) Nicoti... gi\|32039590, gi\|... - gi\|32039590\|ref\|ZP_00137862.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi... PNCB2_PSEAE - Nicotinate phosphoribosyltransferase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR...	466.0	[0..3]	[400..1]
gi\|84317541 - gi\|84317541\|ref\|ZP_00965981.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi...	466.0	[0..1]	[400..1]
gi\|84323740 - gi\|84323740\|ref\|ZP_00971808.1\| COG1488: Nicotinic acid phosphoribosyltransferase [Pseudomonas aerugi...	465.0	[0..1]	[400..1]
gi\|94415489, gi\|... - gi\|94415489\|ref\|ZP_01295329.1\| hypothetical protein PaerP_01002652 [Pseudomonas aeruginosa PA7], gi\|...	463.0	[0..3]	[400..1]
PNCB_PSE14 - Nicotinate phosphoribosyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race...	460.0	[0..3]	[401..1]
PNCB_PSEU2 - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pncB PE=...	459.0	[0..3]	[401..1]
PNCB_PSEPF - Nicotinate phosphoribosyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pncB PE=3 SV=1	456.0	[0..3]	[400..1]
PNCB_PSESM - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pncB PE=3... PNCB_PSESM - Nicotinate phosphoribosyltransferase OS=Pseudomonas syringae pv. tomato GN=pncB PE=3 SV=1	456.0	[0..3]	[401..1]

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Predicted Domain #1

Region A:
Residues: [1-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAESAFSE RIVQNLLDTD FYKLTMMQAV LHNYPNAEVE WEFRCRNQED LRLYLPAIRE  60
   61 QLEYLAGLAI SDEQLAFLER IPFLAPDFIR FLGLFRFNPR YVQTGIENDE FFLRLKGPWL 120
  121 HVILFEVPLL AMISEVRNRA RYPAATVEQA RERLQEKFDW LRREASAEEL AGFKMADFGT 180
  181 RRRFSYRVHE AVVSGLKEDF PGCFVGTSNV HLARKLDLKP LGTMAHEWLM AHQQLGPRLI 240
  241 DSQSAALDCW VREYRGLLGI ALTDCITTDA FLRDFDLYFA KLFDGLRHDS GDPLLWAEKT 300
  301 IAHYLKLGID PLTKTLVFSD GLDLPRALKI YRALQGRINV SFGIGTHFTC DLPGVEPMNI 360
  361 VVKMSACNGH PVAKISDTPG KAQCRDPDFI HYLKHVFQVA EGHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	1yirA
Description:	Crystal Structure of a Nicotinate Phosphoribosyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits