YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60594470, gi\|...
Organism:	Escherichia coli
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60594470, gi|....

Description	E-value	Query Range	Subject Range
gi\|52787935, gi\|... - gi\|52787935\|ref\|YP_093764.1\| YxeH [Bacillus licheniformis ATCC 14580], gi\|52350437\|gb\|AAU43071.1\| Yx...	190.0	[0..7]	[273..12]
gi\|221316252 - gi\|221316252\|ref\|ZP_03598057.1\| hypothetical protein BsubsN3_21247 [Bacillus subtilis subsp. subtili... YXEH_BACSU - Putative phosphatase YxeH OS=Bacillus subtilis (strain 168) GN=yxeH PE=3 SV=1 YXEH_BACSU - Uncharacterized protein YxeH OS=Bacillus subtilis GN=yxeH PE=3 SV=1 gi\|221321164 - gi\|221321164\|ref\|ZP_03602458.1\| hypothetical protein BsubsJ_21195 [Bacillus subtilis subsp. subtilis... gi\|221325448 - gi\|221325448\|ref\|ZP_03606742.1\| hypothetical protein BsubsS_21346 [Bacillus subtilis subsp. subtilis...	182.0	[0..8]	[273..1]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	178.0	[0..8]	[273..1]
gi\|56911156, gi\|... - gi\|56964913\|ref\|YP_176644.1\| hypothetical protein ABC3149 [Bacillus clausii KSM-K16], gi\|56911156\|db...	178.0	[0..8]	[272..1]
gi\|224502434 - gi\|224502434\|ref\|ZP_03670741.1\| hypothetical protein LmonFR_07924 [Listeria monocytogenes FSL R2-561... gi\|16802318 - gi\|16802318\|ref\|NP_463803.1\| hypothetical protein lmo0272 [Listeria monocytogenes EGD-e] gi\|16409637, gi\|... - pir\|\|AI1108 B. subtilis YxeH protein homolog lmo0272 [imported] - Listeria monocytogenes (strain EGD...	177.0	[0..8]	[273..1]
gi\|46906513, gi\|... - gi\|46906513\|ref\|YP_012902.1\| HAD superfamily hydrolase [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|47020086, gi\|... - gi\|47091409\|ref\|ZP_00229206.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|133736481, gi... - gi\|254932499\|ref\|ZP_05265858.1\| hypothetical protein LmonH_08708 [Listeria monocytogenes HPB2262], g... gi\|254825676 - gi\|254825676\|ref\|ZP_05230677.1\| hypothetical protein LmonFS_10939 [Listeria monocytogenes FSL J1-194... gi\|226222908, gi... - gi\|226222908\|ref\|YP_002757015.1\| hypothetical protein Lm4b_00300 [Listeria monocytogenes Clip81459],... gi\|255520774 - gi\|255520774\|ref\|ZP_05388011.1\| hypothetical protein LmonocFSL_06026 [Listeria monocytogenes FSL J1-... gi\|254993193 - gi\|254993193\|ref\|ZP_05275383.1\| hypothetical protein LmonocytoFSL_09283 [Listeria monocytogenes FSL ...	177.0	[0..8]	[273..1]
gi\|22127977, gi\|... - gi\|22127977\|ref\|NP_671400.1\| sugar phosphatase [Yersinia pestis KIM], gi\|21961122\|gb\|AAM87651.1\|AE01... gi\|45443724, gi\|... - gi\|45443724\|ref\|NP_995263.1\| sugar phosphatase [Yersinia pestis biovar Microtus str. 91001], gi\|4543...	177.0	[0..1]	[270..26]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	177.0	[0..8]	[273..1]
gi\|15893917, gi\|... - gi\|15893917\|ref\|NP_347266.1\| HAD superfamily hydrolase [Clostridium acetobutylicum ATCC 824], gi\|150... gi\|25303662 - pir\|\|C96977 probable hydrolase of the HAD family [imported] - Clostridium acetobutylicum	177.0	[0..8]	[273..1]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHMFSIQQPL LVFSDLDGTL LDSHSYDWQP AAPWLTRLRE ANVPVILCSS KTSAEMLYLQ  60
   61 KTLGLQGLPL IAENGAVIQL AEQWQEIDGF PRIISGISHG EISLVLNTLR EKEHFKFTTF 120
  121 DDVDDATIAE WTGLSRSQAA LTQLHEASVT LIWRDSDERM AQFTARLNEL GLQFMQGARF 180
  181 WHVLDASAGK DQAANWIIAT YQQLSGKRPT TLGLGDGPND APLLEVMDYA VIVKGLNREG 240
  241 VHLHDEDPAR VWRTQREGPE GWREGLDHFF SARGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1xviA
Description:	Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits