YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60593550
Organism:	Escherichia coli
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60593550.

Description	E-value	Query Range	Subject Range
gi\|56553651 - gi\|56553651\|pdb\|1R6Y\|A Chain A, Crystal Structure Of Ygin From Escherichia Coli	109.0	[0..1]	[108..1]
gi\|26249600, gi\|... - gi\|26249600\|ref\|NP_755640.1\| hypothetical protein c3769 [Escherichia coli CFT073], gi\|26110008\|gb\|AA... gi\|190907222, gi... - gi\|75240517\|ref\|ZP_00724445.1\| COG1359: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|226899259, gi... - gi\|237706219\|ref\|ZP_04536700.1\| ygiN [Escherichia sp. 3_2_53FAA], gi\|226899259\|gb\|EEH85518.1\| ygiN [... gi\|91212449, gi\|... - gi\|91212449\|ref\|YP_542435.1\| protein YgiN [Escherichia coli UTI89], gi\|91074023\|gb\|ABE08904.1\| prote... gi\|218366877, gi... - gi\|218560108\|ref\|YP_002393021.1\| quinol monooxygenase [Escherichia coli S88], gi\|218366877\|emb\|CAR04... gi\|227835137, gi... - gi\|227887741\|ref\|ZP_04005546.1\| quinol monooxygenase YgiN [Escherichia coli 83972], gi\|227835137\|gb\|... gi\|110344861, gi... - gi\|110643269\|ref\|YP_670999.1\| putative cytoplasmic protein [Escherichia coli 536], gi\|110344861\|gb\|A... gi\|218428891, gi... - gi\|218691327\|ref\|YP_002399539.1\| quinol monooxygenase [Escherichia coli ED1a], gi\|218428891\|emb\|CAR0...	104.0	[0..1]	[102..1]
gi\|170082572, gi... - gi\|170082572\|ref\|YP_001731892.1\| quinol monooxygenase [Escherichia coli str. K-12 substr. DH10B], gi... gi\|170018717, gi... - gi\|170018717\|ref\|YP_001723671.1\| antibiotic biosynthesis monooxygenase [Escherichia coli ATCC 8739],... gi\|188017856, gi... - gi\|188024601\|ref\|ZP_02772488.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4113], gi... gi\|187775786, gi... - gi\|187775786\|ref\|ZP_02798326.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4196], gi... gi\|189358671, gi... - gi\|189401938\|ref\|ZP_02779001.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4401], gi... gi\|189010392, gi... - gi\|189010392\|ref\|ZP_02806907.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4076], gi... YGIN_ECOLI - Protein ygiN - Escherichia coli gi\|189403779, gi... - gi\|189403779\|ref\|ZP_02785192.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4501], gi... gi\|189363877, gi... - gi\|189402913\|ref\|ZP_02792054.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4486], gi... gi\|217319083, gi... - gi\|217326716\|ref\|ZP_03442799.1\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. TW14588], g... gi\|209913760, gi... - gi\|209920501\|ref\|YP_002294585.1\| hypothetical protein ECSE_3310 [Escherichia coli SE11], gi\|20991376... gi\|218353467, gi... - gi\|218696735\|ref\|YP_002404402.1\| quinol monooxygenase [Escherichia coli 55989], gi\|218353467\|emb\|CAU... gi\|218362367, gi... - gi\|218555599\|ref\|YP_002388512.1\| quinol monooxygenase [Escherichia coli IAI1], gi\|218362367\|emb\|CAQ9... gi\|13363384, gi\|... - gi\|15833165\|ref\|NP_311938.1\| hypothetical protein ECs3911 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|218433753, gi... - gi\|218706656\|ref\|YP_002414175.1\| quinol monooxygenase [Escherichia coli UMN026], gi\|218433753\|emb\|CA... gi\|110616470, gi... - gi\|110806922\|ref\|YP_690442.1\| hypothetical protein SFV_3074 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|218701803, gi... - gi\|218701803\|ref\|YP_002409432.1\| quinol monooxygenase [Escherichia coli IAI39], gi\|218371789\|emb\|CAR... gi\|189405567, gi... - gi\|189405567\|ref\|ZP_02822623.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189404783, gi... - gi\|189404783\|ref\|ZP_02810905.2\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC869], gi\|... gi\|195937170 - gi\|195937170\|ref\|ZP_03082552.1\| quinol monooxygenase [Escherichia coli O157:H7 str. EC4024] gi\|194420075, gi... - gi\|194431719\|ref\|ZP_03064010.1\| quinol monooxygenase YgiN [Shigella dysenteriae 1012], gi\|194420075\|... gi\|208734163, gi... - gi\|208812886\|ref\|ZP_03254215.1\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4045], gi... gi\|208727276, gi... - gi\|208807475\|ref\|ZP_03249812.1\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4206], gi... gi\|209400805, gi... - gi\|209400805\|ref\|YP_002272502.1\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4115], g... gi\|208818602, gi... - gi\|208818602\|ref\|ZP_03258922.1\| quinol monooxygenase YgiN [Escherichia coli O157:H7 str. EC4042], gi... EG12657 - quinol monooxygenase / Quinol monooxygenase; MdaB and YgiN form an enzymatic quinone reduction-oxida... gi\|124502162, gi... - gi\|124526058\|ref\|ZP_01698063.1\| Antibiotic biosynthesis monooxygenase [Escherichia coli B], gi\|12450... gi\|238902142, gi... - gi\|238902142\|ref\|YP_002927938.1\| quinol monooxygenase [Escherichia coli BW2952], gi\|238863396\|gb\|ACR... gi\|242378581, gi... - gi\|251786308\|ref\|YP_003000612.1\| hypothetical protein B21_02851 [Escherichia coli BL21], gi\|24237858... gi\|253323177, gi... - gi\|254289728\|ref\|YP_003055476.1\| quinol monooxygenase [Escherichia coli BL21(DE3)], gi\|253979035\|gb\|... gi\|254038198, gi... - gi\|254038198\|ref\|ZP_04872256.1\| quinol monooxygenase YgiN [Escherichia sp. 1_1_43], gi\|226839822\|gb\|... gi\|254162978, gi... - gi\|254162978\|ref\|YP_003046086.1\| quinol monooxygenase [Escherichia coli B str. REL606], gi\|253974879... gi\|254594380, gi... - gi\|254794980\|ref\|YP_003079817.1\| quinol monooxygenase [Escherichia coli O157:H7 str. TW14359], gi\|25... gi\|82545286, gi\|... - gi\|82545286\|ref\|YP_409233.1\| hypothetical protein SBO_2887 [Shigella boydii Sb227], gi\|81246697\|gb\|A... gi\|85675832, gi\|... - gi\|89109799\|ref\|AP_003579.1\| quinol monooxygenase [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|75515178, gi\|... - gi\|75515178\|ref\|ZP_00737362.1\| COG1359: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|74313567, gi\|... - gi\|74313567\|ref\|YP_311986.1\| hypothetical protein SSON_3167 [Shigella sonnei Ss046], gi\|73857044\|gb\|... gi\|75187844, gi\|... - gi\|75187844\|ref\|ZP_00701111.1\| COG1359: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|157162505, gi... - gi\|75196986\|ref\|ZP_00707056.1\| COG1359: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|194424355, gi... - gi\|83587530\|ref\|ZP_00926157.1\| COG1359: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|187733827, gi... - gi\|75178929\|ref\|ZP_00698965.1\| COG1359: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|75239395, gi\|... - gi\|75239395\|ref\|ZP_00723366.1\| COG1359: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|75259967, gi\|... - gi\|75259967\|ref\|ZP_00731245.1\| COG1359: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|194415735, gi... - gi\|75212333\|ref\|ZP_00712357.1\| COG1359: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|191167576, gi... - gi\|75229291\|ref\|ZP_00715850.1\| COG1359: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|24114330, gi\|... - gi\|24114330\|ref\|NP_708840.1\| hypothetical protein SF3069 [Shigella flexneri 2a str. 301], gi\|2405349... YGIN_SHIFL - Probable quinol monooxygenase YgiN OS=Shigella flexneri GN=ygiN PE=3 SV=1 YGIN_ECO57 - Probable quinol monooxygenase YgiN OS=Escherichia coli O157:H7 GN=ygiN PE=3 SV=1 gi\|30064379, gi\|... - gi\|30064379\|ref\|NP_838550.1\| hypothetical protein S3274 [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|12517598, gi\|... - gi\|15803570\|ref\|NP_289603.1\| hypothetical protein Z4380 [Escherichia coli O157:H7 EDL933], gi\|125175... EG12657 - quinol monooxygenase / Quinol monooxygenase; MdaB and YgiN form an enzymatic quinone reduction-oxida...	103.0	[0..1]	[102..1]
gi\|82778362, gi\|... - gi\|82778362\|ref\|YP_404711.1\| hypothetical protein SDY_3211 [Shigella dysenteriae Sd197], gi\|81242510...	102.0	[0..1]	[102..1]
gi\|161365532, gi... - gi\|161616168\|ref\|YP_001590133.1\| hypothetical protein SPAB_03970 [Salmonella enterica subsp. enteric... gi\|167551908, gi... - gi\|205323283\|gb\|EDZ11122.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|167990270, gi... - gi\|205331156\|gb\|EDZ17920.1\| protein YgiN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168231778, gi... - gi\|205333883\|gb\|EDZ20647.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|29139076, gi\|... - gi\|29143442\|ref\|NP_806784.1\| hypothetical protein t3101 [Salmonella enterica subsp. enterica serovar... gi\|16761955 - gi\|16761955\|ref\|NP_457572.1\| hypothetical protein STY3358 [Salmonella enterica subsp. enterica serov... gi\|16504257, gi\|... - gi\|25337219\|pir\|\|AD0889 conserved hypothetical protein STY3358 [imported] - Salmonella enterica subs... gi\|16421736, gi\|... - gi\|16766480\|ref\|NP_462095.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421736\|... gi\|198245544, gi... - gi\|198245544\|ref\|YP_002217159.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Dublin st... gi\|199605244, gi... - gi\|200388146\|ref\|ZP_03214758.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204322372, gi... - gi\|204928050\|ref\|ZP_03219250.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Javiana st... gi\|205354096, gi... - gi\|205354096\|ref\|YP_002227897.1\| hypothetical protein SG3077 [Salmonella enterica subsp. enterica se... gi\|62181694, gi\|... - gi\|62181694\|ref\|YP_218111.1\| hypothetical protein SC3124 [Salmonella enterica subsp. enterica serova... gi\|194711366, gi... - gi\|194735864\|ref\|YP_002116134.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|56129378, gi\|... - gi\|56415121\|ref\|YP_152196.1\| hypothetical protein SPA3049 [Salmonella enterica subsp. enterica serov... gi\|197249456, gi... - gi\|197249456\|ref\|YP_002148107.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Agona str... gi\|197243042, gi... - gi\|197264787\|ref\|ZP_03164861.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197095527, gi... - gi\|197364050\|ref\|YP_002143687.1\| hypothetical protein SSPA2845 [Salmonella enterica subsp. enterica ... gi\|168819758, gi... - gi\|205343284\|gb\|EDZ30048.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194442206, gi... - gi\|194442206\|ref\|YP_002042446.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Newport s... gi\|194451174, gi... - gi\|194451174\|ref\|YP_002047176.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194471945, gi... - gi\|194471945\|ref\|ZP_03077929.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|197288992, gi... - gi\|197288992\|gb\|EDY28363.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|205337815, gi... - gi\|205337815\|gb\|EDZ24579.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|205348477, gi... - gi\|205348477\|gb\|EDZ35108.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168463612, gi... - gi\|195633245\|gb\|EDX51659.1\| protein YgiN [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|213973587 - gi\|213973587\|ref\|ZP_03400846.1\| hypothetical protein Salmonellaentericaenterica_02566 [Salmonella en... gi\|214001845 - gi\|214001845\|ref\|ZP_03412580.1\| hypothetical protein Salmonellentericaenterica_15986 [Salmonella ent... gi\|224469508, gi... - gi\|224584980\|ref\|YP_002638779.1\| hypothetical protein SPC_3253 [Salmonella enterica subsp. enterica ... gi\|213424346 - gi\|213424346\|ref\|ZP_03357170.1\| hypothetical protein SentesTyphi_01030 [Salmonella enterica subsp. e... gi\|213614426 - gi\|213614426\|ref\|ZP_03371252.1\| hypothetical protein SentesTyp_13494 [Salmonella enterica subsp. ent... gi\|213645889 - gi\|213645889\|ref\|ZP_03375942.1\| hypothetical protein SentesTy_00169 [Salmonella enterica subsp. ente... gi\|213855232 - gi\|213855232\|ref\|ZP_03383472.1\| hypothetical protein SentesT_14632 [Salmonella enterica subsp. enter... gi\|207858439, gi... - gi\|207858439\|ref\|YP_002245090.1\| hypothetical protein SEN3023 [Salmonella enterica subsp. enterica s... gi\|213029280 - gi\|213029280\|ref\|ZP_03343727.1\| hypothetical protein Salmonelentericaenterica_46695 [Salmonella ente... gi\|213052526 - gi\|213052526\|ref\|ZP_03345404.1\| hypothetical protein Salmoneentericaenterica_06131 [Salmonella enter... gi\|213420355 - gi\|213420355\|ref\|ZP_03353421.1\| hypothetical protein Salmonentericaenterica_22425 [Salmonella enteri... gi\|238909981 - gi\|238909981\|ref\|ZP_04653818.1\| hypothetical protein SentesTe_02445 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ygiN] [protein=putative cytoplasmic protein] [protein_id=YP_005239352.1] [location=3361775..33...	99.0	[0..1]	[101..1]
gi\|55247162, gi\|... - gi\|57965636\|ref\|XP_561258.1\| ENSANGP00000026009 [Anopheles gambiae str. PEST], gi\|55247162\|gb\|EAL423...	97.0	[0..2]	[105..5]
gi\|86572017, gi\|... - gi\|86748989\|ref\|YP_485485.1\| antibiotic biosynthesis monooxygenase [Rhodopseudomonas palustris HaA2]...	96.0	[0..1]	[108..1]
gi\|7470153 - pir\|\|S77088 hypothetical protein sll1783 - Synechocystis sp. (strain PCC 6803) Y1783_SYNY3 - Uncharacterized protein sll1783 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1783 PE=3 SV=1 YH83_SYNY3, Y178... - (P73602) Hypothetical protein sll1783, Uncharacterized protein sll1783 OS=Synechocystis sp. (strain ...	93.0	[0..2]	[101..50]
gi\|77962284, gi\|... - gi\|77962284\|ref\|ZP_00826106.1\| COG1359: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	93.0	[0..1]	[103..1]
gi\|82716665, gi\|... - gi\|82736331\|ref\|ZP_00899190.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82716665\|g...	93.0	[0..2]	[108..28]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTVIAEIRT RPGQHHRQAV LDQFAKIVPT VLKEEGCHGY APMVDCAAGV SFQSMAPDSI  60
   61 VMIEQWESIA HLEAHLQTPH MKAYSEAVKG DVLEMNIRIL QPGISGRVHH HHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1tuvA
Description:	Crystal structure of YgiN in complex with menadione
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits