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View Structure Prediction Details

Protein: gi|115487094, gi...
Organism: Oryza sativa Japonica Group
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115487094, gi....

Description E-value Query
Range
Subject
Range
gi|77548469 - gi|77548469|gb|ABA91266.1| NAC domain transcription factor, putative, expressed [Oryza sativa (japon...
441.0 [0..1] [393..1]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASIKCPV PIIAEVNIYK CNPWDLPGKA  60
   61 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK 120
  121 GKPPKGVKTD WIMHEYRLTG TSANNTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [180-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQHDQEPEGS TVDEQLEDIH DNNSSSQQPP APPDMNNQQS DFQPMTAMSM SKSCSLTDLL  60
   61 NNLDCAALSQ FLLDGSSDAI AELPAPPSPL IYPNQTLNYN INNNMPHAFE SRLDHHDGYV 120
  121 NNYNVNGLRR KRMMACSATS FDDGSSSSSS DFLHVAKKPL LLPSDSRGSG FGGGYCNQQL 180
  181 SETATGFQFQ NGNMLSHPFP LNQQLLLNNH LQMQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle