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View Structure Prediction Details

Protein: gi|77548469
Organism: Oryza sativa Japonica Group
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77548469.

Description E-value Query
Range
Subject
Range
gi|115487094, gi... - gi|77552909|gb|ABA95705.1| NAC domain transcription factor, putative, expressed [Oryza sativa (japon...
435.0 [0..1] [391..1]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
   61 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK 120
  121 GKPPKGVKTD WIMHEYRLTG TSANSTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD 180
  181 QHDQEPEEST VEQLEDIHDN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSEQPPAPA DMNNQQSDFQ PMTAMSMSKS CSLTDLLNTI DCAALSQFLL DGSSDAIAEP  60
   61 PAPPSPLIYT TPHPNYQTLN YNINSNSSMP HAFESRLDHH DGYVNNYNVN GLRRKRMMAC 120
  121 SATSFDDGSS SNDFVHAVVK KPQLLPSDSR GSGFGGGYCN QQLSETATGF QFQNGNLLSH 180
  181 PFPLNNHLQM Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle