YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|76802166, gi\|...
Organism:	Natronomonas pharaonis DSM 2160
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|76802166, gi|....

Description	E-value	Query Range	Subject Range
gi\|68447879, gi\|... - gi\|70727153\|ref\|YP_254069.1\| hypothetical protein SH2154 [Staphylococcus haemolyticus JCSC1435], gi\|...	111.0	[0..7]	[107..4]
gi\|72495803, gi\|... - gi\|73663288\|ref\|YP_302069.1\| hypothetical protein SSP1979 [Staphylococcus saprophyticus subsp. sapro...	110.0	[0..6]	[107..2]
gi\|251810171, gi... - gi\|251810171\|ref\|ZP_04824644.1\| CHY zinc finger family protein [Staphylococcus epidermidis BCM-HMP00... gi\|57866347, gi\|... - gi\|57866347\|ref\|YP_187997.1\| hypothetical protein SERP0404 [Staphylococcus epidermidis RP62A], gi\|57... gi\|27314980, gi\|... - gi\|27467437\|ref\|NP_764074.1\| hypothetical protein SE0519 [Staphylococcus epidermidis ATCC 12228], gi...	109.0	[0..7]	[107..3]
gi\|15923727, gi\|... - gi\|15923727\|ref\|NP_371261.1\| hypothetical protein SAV0737 [Staphylococcus aureus subsp. aureus Mu50]... gi\|15926414, gi\|... - gi\|15926414\|ref\|NP_373947.1\| hypothetical protein SA0692 [Staphylococcus aureus subsp. aureus N315],... gi\|49482994, gi\|... - gi\|49482994\|ref\|YP_040218.1\| hypothetical protein SAR0791 [Staphylococcus aureus subsp. aureus MRSA2... gi\|49244052, gi\|... - gi\|49485609\|ref\|YP_042830.1\| hypothetical protein SAS0702 [Staphylococcus aureus subsp. aureus MSSA4... gi\|156721200, gi... - gi\|156979065\|ref\|YP_001441324.1\| hypothetical protein SAHV_0734 [Staphylococcus aureus subsp. aureus... gi\|25353254 - pir\|\|B89846 conserved hypothetical protein SA0692 [imported] - Staphylococcus aureus (strain N315) gi\|150373718, gi... - gi\|151220918\|ref\|YP_001331740.1\| hypothetical protein NWMN_0706 [Staphylococcus aureus subsp. aureus... gi\|21282428, gi\|... - gi\|21282428\|ref\|NP_645516.1\| hypothetical protein MW0699 [Staphylococcus aureus subsp. aureus MW2], ... gi\|221140824 - gi\|221140824\|ref\|ZP_03565317.1\| hypothetical protein SauraJ_04198 [Staphylococcus aureus subsp. aure... gi\|227246435, gi... - gi\|227557171\|ref\|ZP_03987218.1\| CHY zinc finger family protein [Staphylococcus aureus subsp. aureus ... gi\|227899263, gi... - gi\|227899263\|ref\|ZP_04017068.1\| CHY zinc finger family protein [Staphylococcus aureus subsp. aureus ... gi\|251802813, gi... - gi\|251813707\|ref\|ZP_04828180.1\| CHY zinc finger family protein [Staphylococcus aureus subsp. aureus ... gi\|253315830 - gi\|253315830\|ref\|ZP_04839043.1\| hypothetical protein SauraC_06725 [Staphylococcus aureus subsp. aure... gi\|253731365, gi... - gi\|253731365\|ref\|ZP_04865530.1\| CHY zinc finger family protein [Staphylococcus aureus subsp. aureus ... gi\|253732815, gi... - gi\|253732815\|ref\|ZP_04866980.1\| CHY zinc finger family protein [Staphylococcus aureus subsp. aureus ... gi\|255005528 - gi\|255005528\|ref\|ZP_05144129.2\| hypothetical protein SauraM_03635 [Staphylococcus aureus subsp. aure... gi\|90582497, gi\|... - gi\|90582497\|ref\|ZP_01238260.1\| CHY zinc finger [Staphylococcus aureus subsp. aureus JH1], gi\|9042828... gi\|57285761, gi\|... - gi\|57651575\|ref\|YP_185674.1\| hypothetical protein SACOL0800 [Staphylococcus aureus subsp. aureus COL... gi\|90585254, gi\|... - gi\|90585254\|ref\|ZP_01240964.1\| CHY zinc finger [Staphylococcus aureus subsp. aureus JH9], gi\|9043098... gi\|88194515, gi\|... - gi\|88194515\|ref\|YP_499310.1\| hypothetical protein SAOUHSC_00751 [Staphylococcus aureus subsp. aureus... gi\|82655972, gi\|... - gi\|82750441\|ref\|YP_416182.1\| hypothetical protein SAB0689c [Staphylococcus aureus RF122], gi\|8265597... gi\|221137636 - gi\|221137636\|ref\|ZP_03562442.1\| hypothetical protein SauraJK_03148 [Staphylococcus aureus subsp. aur...	108.0	[0..7]	[107..3]
HOT13_KLULA - Helper of Tim protein 13 OS=Kluyveromyces lactis GN=HOT13 PE=3 SV=1 HOT13_KLULA - Helper of Tim protein 13 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 126...	107.0	[0..7]	[106..5]
gi\|50955608, gi\|... - gi\|50955608\|ref\|YP_062896.1\| hypothetical protein Lxx20930 [Leifsonia xyli subsp. xyli str. CTCB07],...	107.0	[0..7]	[109..5]
gi\|76573604 - gi\|76573604\|dbj\|BAE44688.1\| hypothetical protein [Candida albicans] gi\|46443308, gi\|... - gi\|77022694\|ref\|XP_888791.1\| hypothetical protein CaO19_6555 [Candida albicans SC5314], gi\|68469208\|...	105.0	[0..6]	[108..15]
gi\|165976003, gi... - gi\|165976003\|ref\|YP_001651596.1\| hypothetical protein APJL_0582 [Actinobacillus pleuropneumoniae ser... gi\|126096863, gi... - gi\|126208071\|ref\|YP_001053296.1\| hypothetical protein APL_0589 [Actinobacillus pleuropneumoniae L20]... gi\|190149903, gi... - gi\|190149903\|ref\|YP_001968428.1\| hypothetical protein APP7_0634 [Actinobacillus pleuropneumoniae ser... gi\|32034369 - gi\|32034369\|ref\|ZP_00134559.1\| COG4357: Uncharacterized conserved protein [Actinobacillus pleuropneu...	104.0	[0..6]	[107..2]
gi\|115665260, gi... - gi\|115969353\|ref\|XP_001196520.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	103.0	[0..4]	[105..1177]
gi\|56965757, gi\|... - gi\|56965757\|ref\|YP_177491.1\| hypothetical protein ABC3999 [Bacillus clausii KSM-K16], gi\|56912003\|db...	103.0	[0..8]	[107..4]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVHGYEVRG VGLDGETRCA HYGTERDVVA IKFACCATYY ACHRCHEECT DHERSRWPLG  60
   61 RRDEKAVLCG VCGTELAVQE YLGVDSCPDC GARFNPGCNN HTHLYFEERP TDGT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2dktA
Description:	No description for 2dktA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits