YRC Public Data Repository - Protein Structure Prediction

Protein:	RL18_NATPD
Organism:	Natronomonas pharaonis DSM 2160
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL18_NATPD.

Description	E-value	Query Range	Subject Range
RL18_HALSA - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl... RL18_HALS3 - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18 PE=... RL18_HALSA - 50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3	202.0	[0..1]	[183..1]
RL18_HALMA - 50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3 RL18_HALMA - 50S ribosomal protein L18 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B...	195.0	[0..1]	[182..1]
gi\|114557920 - gi\|114557920\|ref\|XP_513564.2\| PREDICTED: similar to MSTP030 [Pan troglodytes]	194.0	[0..2]	[183..120]
gi\|7440747 - pir\|\|B69127 ribosomal protein L5 - Methanobacterium thermoautotrophicum (strain Delta H) RL18_METTH - 50S ribosomal protein L18 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / ...	194.0	[0..1]	[184..1]
RL18_HALMA - (P14123) 50S ribosomal protein L18P (Hmal18) (Hl12) gi\|88192388, gi\|... - gi\|88192388\|pdb\|2B9P\|S Chain S, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co... gi\|28373733 - gi\|28373733\|pdb\|1ML5\|QQ Chain q, Structure Of The E. Coli Ribosomal Termination Complex With Release... gi\|66361033\|pdb\|... - Chain Q, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	191.0	[0..2]	[182..1]
RL18_HALWD - 50S ribosomal protein L18 OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=rpl18 PE=3 SV=1	191.0	[0..1]	[182..1]
gi\|61552973 - gi\|61552973\|gb\|AAX46329.1\| ribosomal protein L5 [Bos taurus]	189.0	[0..2]	[183..11]
gi\|40642990 - gi\|40642990\|emb\|CAD91421.1\| ribosomal protein L5 [Crassostrea gigas]	188.0	[0..2]	[183..11]
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2	188.0	[0..2]	[183..11]
gi\|44966788 - gi\|44966788\|gb\|AAS49559.1\| ribosomal protein L5 [Latimeria chalumnae]	187.0	[0..2]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGPRYTVP MRRRREARTN YHQRLRLLKS GKPRLVARKS NNQTKAQLVV TGPQGDETVA  60
   61 SATSADLEAF GWEAPTGNLP AAYLTGLLAG KRAIEAGLDE AVLDIGLNTA TPGNKVFAVQ 120
  121 EGVIDAGLEV PHNEDVFADW QRTRGAHIAE YAEQLEDGLY SGDFDATELP DHFDEVRERV 180
  181 EDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1s72N
Description:	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits