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View Structure Prediction Details

Protein: NAC68_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC68_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|6730938 - gi|6730938|dbj|BAA89798.1| OsNAC4 protein [Oryza sativa]
gi|15528779, gi|... - gi|56785066|dbj|BAD82705.1| OsNAC4 protein [Oryza sativa Japonica Group], gi|15528779|dbj|BAB64820.1...
379.0 [0..3] [318..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMAAAVGGS GRRDAEAELN LPPGFRFHPT DEELVVHYLC RKVARQPLPV PIIAEVDLYK  60
   61 LDPWDLPEKA LFGRKEWYFF TPRDRKYPNG SRPNRAAGRG YWKATGADKP VAPKGSARTV 120
  121 GIKKALVFYS GKAPRGVKTD WIMHEYRLAD ADRAPGGKKG SQKLDEWVLC RLYNKKNNWE 180
  181 KVKLEQQDVA S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.30103
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [192-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAAAAPRNHH HQNGEVMDAA AADTMSDSFQ THDSDIDNAS AGLRHGGCGG GGFGDVAPPR  60
   61 NGFVTVKEDN DWFTGLNFDE LQPPYMMNLQ HMQMQMVNPA APGHDGGYLQ SISSPQMKMW 120
  121 QTILPPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle