YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194545851, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194545851, gi....

Description	E-value	Query Range	Subject Range
RRAAH_PSEPF - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl...	2.0E-58	[2..162]	[3..163]
RRAAH_PSEU2 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas syringae pv. syringae (strain B72...	9.0E-58	[1..162]	[1..162]
RRAAH_PSESM - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas syringae pv. tomato (strain DC300... RRAA_PSESM - Regulator of ribonuclease activity A OS=Pseudomonas syringae pv. tomato GN=rraA PE=3 SV=1 gi\|213968091, gi... - gi\|213968091\|ref\|ZP_03396236.1\| dimethylmenaquinone methyltransferase family protein [Pseudomonas sy...	2.0E-57	[1..162]	[1..162]
RRAAH_AZOVD - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-... gi\|53611078, gi\|... - gi\|67153424\|ref\|ZP_00415169.1\| Protein of unknown function 1935 [Azotobacter vinelandii AvOP], ref\|Z...	3.0E-57	[1..162]	[1..162]
RRAAH_PSEF5 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC B...	2.0E-56	[2..162]	[3..163]
RRAAH_PSEPK - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas putida (strain KT2440) GN=PP_2084...	4.0E-56	[2..162]	[3..163]
tr\|E4RAB9\|E4RAB9... - Regulator of ribonuclease activity A OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_3568 PE=3 SV=... RRAAH_PSEP1 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas putida (strain F1 / ATCC 700007) ...	1.0E-55	[2..162]	[3..163]
gi\|107101203 - gi\|107101203\|ref\|ZP_01365121.1\| hypothetical protein PaerPA_01002235 [Pseudomonas aeruginosa PACS2]	1.0E-55	[1..162]	[1..162]
RRAAH_HAHCH - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_...	2.0E-55	[1..162]	[1..162]
RRAAH_PSE14 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas savastanoi pv. phaseolicola (stra...	2.0E-55	[1..162]	[1..164]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYVTPDLCD AYPELVQVVE PMFSNFGGRD SFGGEIVTIK CFEDNSLVKE QVDKDGKGKV  60
   61 LVVDGGGSLR RALLGDMLAE KAAKNGWEGI VVYGCIRDVD VIAQTDLGVQ ALASHPLKTD 120
  121 KRGIGDLNVA VTFGGVTFRP GEFVYADNNG IIVSPQALKM PE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1vi4A
Description:	Crystal structure of Regulator of ribonuclease acivity A protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.812797739319617	bayes_pls_golite062009
binding	0.398946779962706	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: