YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7190700, gi\|1...
Organism:	Chlamydia muridarum Nigg
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7190700, gi|1....

Description	E-value	Query Range	Subject Range
gi\|30704877, gi\|... - gi\|56676385\|ref\|NP_067653.2\| MYG1 protein [Homo sapiens], gi\|30704877\|gb\|AAH51871.1\| Chromosome 12 o...	429.0	[0..2]	[288..40]
gi\|114644498 - gi\|114644498\|ref\|XP_522402.2\| PREDICTED: MYG1 protein isoform 4 [Pan troglodytes]	427.0	[0..2]	[288..40]
MYG1_RAT - UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1	427.0	[0..2]	[288..40]
gi\|109096910 - gi\|109096910\|ref\|XP_001104094.1\| PREDICTED: similar to MYG1 protein isoform 3 [Macaca mulatta]	425.0	[0..2]	[288..40]
gi\|20306404 - gi\|20306404\|gb\|AAH28501.1\| Melanocyte proliferating gene 1 [Mus musculus]	425.0	[0..2]	[288..39]
gi\|76167647, gi\|... - gi\|76789117\|ref\|YP_328203.1\| MYG1 protein [Chlamydia trachomatis A/HAR-13], gi\|76167647\|gb\|AAX50655....	423.0	[0..1]	[291..14]
gi\|7468963 - gi\|7468963\|pir\|\|F71522 probable metal dependent hydrolase - Chlamydia trachomatis (serotype D, stra...	423.0	[0..1]	[291..1]
gi\|61554766, gi\|... - gi\|78042530\|ref\|NP_001030210.1\| MYG1 protein [Bos taurus], gi\|61554766\|gb\|AAX46611.1\| MYG1 protein [...	422.0	[0..3]	[288..41]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMQIPRSVG THDGSFHADE VTACALLIMF DLVDKDKIIR TRDSEKLAQC EYVCDVGGRY  60
   61 SIADKRFDHH QVSYTGSWS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.541	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.524	c.44.2	Enzyme IIB-cellobiose
View	Download	0.497	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.478	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.443	c.37.1	P-loop containing nucleoside triphosphate hydrolases

Predicted Domain #2

Region A:
Residues: [80-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGMVLDYLH HLGSLPHEEY EYLNSTLVHG VDEQDNGRFF SKEGFCSFSD IIKIYNPLEE  60
   61 GGNTDKEFFF ALHFAIDLLT RLREKFRYDR ICRDVVKQVM EKEDVCLRFD RPLAWQENFF 120
  121 SLGGENHPAA FVSFPCSDQW ILRGIPPTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [229-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRRMEVRIPF PEDWAGLLGD QLVKATGIPG AIFCHKGLFL SVWDSRESCE EALNLVLKQQ  60
   61 GVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits