YRC Public Data Repository - Protein Structure Prediction

Protein:	EX7S_RUEPO
Organism:	Ruegeria pomeroyi DSS-3
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EX7S_RUEPO.

Description	E-value	Query Range	Subject Range
gi\|89359862, gi\|... - gi\|89359862\|ref\|ZP_01197682.1\| Exonuclease VII, small subunit [Xanthobacter autotrophicus Py2], gi\|8...	90.0	[0..1]	[71..44]
gi\|83593949, gi\|... - gi\|83593949\|ref\|YP_427701.1\| exodeoxyribonuclease VII small subunit [Rhodospirillum rubrum ATCC 1117...	88.0	[0..1]	[71..52]
gi\|71274977, gi\|... - gi\|71274977\|ref\|ZP_00651265.1\| Exonuclease VII, small subunit [Xylella fastidiosa Dixon], gi\|7116470... gi\|71729918, gi\|... - gi\|71900343\|ref\|ZP_00682478.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7172991...	87.0	[0..3]	[66..63]
gi\|85373941, gi\|... - gi\|85373941\|ref\|YP_458003.1\| exodeoxyribonuclease VII small subunit [Erythrobacter litoralis HTCC259...	87.0	[0..1]	[71..15]
gi\|71898769, gi\|... - gi\|71898769\|ref\|ZP_00680938.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7173153...	86.0	[0..3]	[66..63]
gi\|225626939, gi... - gi\|225626939\|ref\|ZP_03784978.1\| exodeoxyribonuclease VII, small subunit [Brucella ceti str. Cudo], g... gi\|225851967, gi... - gi\|225851967\|ref\|YP_002732200.1\| exodeoxyribonuclease VII, small subunit [Brucella melitensis ATCC 2... gi\|254693212 - gi\|254693212\|ref\|ZP_05155040.1\| exodeoxyribonuclease VII small subunit [Brucella abortus bv. 3 str. ... gi\|254696857 - gi\|254696857\|ref\|ZP_05158685.1\| exodeoxyribonuclease VII small subunit [Brucella abortus bv. 2 str. ... gi\|237814904, gi... - gi\|237814904\|ref\|ZP_04593902.1\| exodeoxyribonuclease VII, small subunit [Brucella abortus str. 2308 ... gi\|254688729 - gi\|254688729\|ref\|ZP_05151983.1\| exodeoxyribonuclease VII small subunit [Brucella abortus bv. 6 str. ... gi\|148559152, gi... - gi\|148559152\|ref\|YP_001258452.1\| exodeoxyribonuclease VII small subunit [Brucella ovis ATCC 25840], ... gi\|163673434, gi... - gi\|163842711\|ref\|YP_001627115.1\| exodeoxyribonuclease VII small subunit [Brucella suis ATCC 23445], ... gi\|254707839 - gi\|254707839\|ref\|ZP_05169667.1\| exodeoxyribonuclease VII small subunit [Brucella pinnipedialis M163/... gi\|189019239, gi... - gi\|189023667\|ref\|YP_001934435.1\| Exonuclease VII, small subunit [Brucella abortus S19], gi\|189019239... gi\|254709579 - gi\|254709579\|ref\|ZP_05171390.1\| exodeoxyribonuclease VII small subunit [Brucella pinnipedialis B2/94... gi\|254701236 - gi\|254701236\|ref\|ZP_05163064.1\| exodeoxyribonuclease VII small subunit [Brucella suis bv. 5 str. 513... gi\|254703783 - gi\|254703783\|ref\|ZP_05165611.1\| exodeoxyribonuclease VII small subunit [Brucella suis bv. 3 str. 686... gi\|254718609 - gi\|254718609\|ref\|ZP_05180420.1\| exodeoxyribonuclease VII small subunit [Brucella sp. 83/13] gi\|254729762 - gi\|254729762\|ref\|ZP_05188340.1\| exodeoxyribonuclease VII small subunit [Brucella abortus bv. 4 str. ... gi\|254713005 - gi\|254713005\|ref\|ZP_05174816.1\| exodeoxyribonuclease VII small subunit [Brucella ceti M644/93/1] gi\|161335214, gi... - gi\|161618403\|ref\|YP_001592290.1\| exodeoxyribonuclease VII small subunit [Brucella canis ATCC 23365],... gi\|254716641 - gi\|254716641\|ref\|ZP_05178452.1\| exodeoxyribonuclease VII small subunit [Brucella ceti M13/05/1] gi\|82699343 - gi\|82699343\|ref\|YP_413917.1\| exodeoxyribonuclease VII small subunit [Brucella melitensis biovar Abor... gi\|62195548, gi\|... - gi\|62289416\|ref\|YP_221209.1\| exodeoxyribonuclease VII small subunit [Brucella abortus bv. 1 str. 9-9... gi\|23347223, gi\|... - gi\|23501332\|ref\|NP_697459.1\| exodeoxyribonuclease VII small subunit [Brucella suis 1330], gi\|2334722... gi\|82615444 - gi\|82615444\|emb\|CAJ10413.1\| Exonuclease VII, small subunit [Brucella melitensis biovar Abortus 2308] gi\|153007887, gi... - gi\|153007887\|ref\|YP_001369102.1\| exodeoxyribonuclease VII small subunit [Ochrobactrum anthropi ATCC ...	86.0	[0..1]	[70..13]
gi\|68539728, gi\|... - gi\|98977753\|gb\|ABF53904.1\| Exodeoxyribonuclease VII small subunit [Sphingopyxis alaskensis RB2256], ...	85.0	[0..1]	[69..16]
EX7S_BRUME - Exodeoxyribonuclease 7 small subunit OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCT... EX7S_BRUSU - Exodeoxyribonuclease 7 small subunit OS=Brucella suis GN=xseB PE=3 SV=1 EX7S_BRUSU - Exodeoxyribonuclease 7 small subunit OS=Brucella suis biovar 1 (strain 1330) GN=xseB PE=3 SV=1 EX7S_BRUME - Exodeoxyribonuclease 7 small subunit OS=Brucella melitensis GN=xseB PE=3 SV=1	85.0	[0..1]	[70..12]
gi\|89952462, gi\|... - gi\|90022862\|ref\|YP_528689.1\| exodeoxyribonuclease VII small subunit [Saccharophagus degradans 2-40],...	85.0	[0..1]	[71..42]
gi\|69278247, gi\|... - gi\|69278247\|ref\|ZP_00613458.1\| Exonuclease VII, small subunit [Mesorhizobium sp. BNC1], gi\|68191220\|...	85.0	[0..1]	[70..17]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEQAMKEL ETVVGQLERG DVALDQSIAL YERGAALKKR CEDELKRAEE KVAAITLDSN  60
   61 GQPTGTKPVE GL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1vp7A
Description:	Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
exodeoxyribonuclease VII activity	9.53039271797148	bayes_pls_golite062009
deoxyribonuclease activity	2.18997628780402	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	1.84024428921756	bayes_pls_golite062009
exonuclease activity	1.73859258268859	bayes_pls_golite062009
exodeoxyribonuclease activity, producing 5'-phosphomonoesters	1.67790259289477	bayes_pls_golite062009
exodeoxyribonuclease activity	1.66998224374849	bayes_pls_golite062009
hydrolase activity	1.29702012649067	bayes_pls_golite062009
catalytic activity	0.60409960326459	bayes_pls_golite062009
nuclease activity	0.39966763058782	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.217756456347342	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: