YRC Public Data Repository - Protein Structure Prediction

Protein:	PQQD_RUEPO
Organism:	Ruegeria pomeroyi DSS-3
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQQD_RUEPO.

Description	E-value	Query Range	Subject Range
gi\|95108660 - gi\|95108660\|emb\|CAK13354.1\| coenzyme PQQ synthesis protein D (Coenzyme PQQ synthesis protein II) [Ps... PQQD_PSEE4 - Coenzyme PQQ synthesis protein D OS=Pseudomonas entomophila (strain L48) GN=pqqD PE=3 SV=1	120.0	[0..3]	[94..1]
gi\|82738185, gi\|... - gi\|82738185\|ref\|ZP_00901023.1\| coenzyme PQQ synthesis protein D [Pseudomonas putida F1], gi\|82714792...	119.0	[0..3]	[94..8]
PQQD1_PSEPK - Coenzyme PQQ synthesis protein D 1 OS=Pseudomonas putida (strain KT2440) GN=pqqD1 PE=3 SV=1 tr\|E4RE10\|E4RE10... - Coenzyme PQQ synthesis protein D OS=Pseudomonas putida (strain BIRD-1) GN=pqqD PE=3 SV=1	117.0	[0..3]	[94..1]
gi\|59891640 - gi\|59891640\|gb\|AAX10037.1\| pyrroloquinoline quinone biosynthesis protein D [Pseudomonas fluorescens]	117.0	[0..3]	[94..1]
gi\|67088389, gi\|... - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP], gi\|67088389\|g... gi\|67154256 - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP]	116.0	[0..3]	[93..1]
PQQD_RAHAQ - Coenzyme PQQ synthesis protein D OS=Rahnella aquatilis GN=pqqD PE=3 SV=2	116.0	[0..3]	[94..2]
gi\|89092879, gi\|... - gi\|89092879\|ref\|ZP_01165831.1\| coenzyme PQQ synthesis protein D [Oceanospirillum sp. MED92], gi\|8908...	116.0	[0..1]	[93..1]
PQQD_RHOPS - Coenzyme PQQ synthesis protein D OS=Rhodopseudomonas palustris (strain BisB5) GN=pqqD PE=3 SV=1	115.0	[0..3]	[94..6]
gi\|113196162 - gi\|113196162\|gb\|ABI31436.1\| PqqD [Serratia marcescens]	115.0	[0..3]	[94..1]
gi\|207088422 - gi\|207088422\|gb\|EDZ65694.1\| coenzyme PQQ synthesis protein D [Nitrosococcus oceani AFC27] gi\|224408768, gi... - gi\|254435311\|ref\|ZP_05048818.1\| coenzyme PQQ synthesis protein D [Nitrosococcus oceani AFC27], gi\|22... gi\|77166080, gi\|... - gi\|77166080\|ref\|YP_344605.1\| pyrroloquinoline quinone biosynthesis protein PqqD [Nitrosococcus ocean...	114.0	[0..5]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLALAPTDR PYLPRGVRLV TDRVRGGIVL LAPEKAVALD AVGEAILSRV DGQTSLAALV  60
   61 DQLVEAYDAP REQIEQDVQA FLQGLRARMF LMVAP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.638272
Match:	PF05402.3
Description:	No description for PF05402.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits