YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56479684, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56479684, gi|....

Description	E-value	Query Range	Subject Range
gi\|208814970, gi... - gi\|208814970\|ref\|ZP_03256149.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... gi\|208729215, gi... - gi\|208809414\|ref\|ZP_03251751.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... CITD_ECO5E - Citrate lyase acyl carrier protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=citD PE=3 S... gi\|208737322, gi... - gi\|208823129\|ref\|ZP_03263447.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... CITD_ECOUT - Citrate lyase acyl carrier protein OS=Escherichia coli (strain UTI89 / UPEC) GN=citD PE=3 SV=1 CITD_ECO27 - Citrate lyase acyl carrier protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=citD PE=3... CILG_ECOLI, CITD... - Citrate lyase acyl carrier protein (Citrate lyase gamma chain) - Escherichia coli, (P77618) Citrate ... gi\|15829910, gi\|... - gi\|15829910\|ref\|NP_308683.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 str. Sakai], gi\|1... CITD_ECOSE - Citrate lyase acyl carrier protein OS=Escherichia coli (strain SE11) GN=citD PE=3 SV=1 CITD_ECOL5 - Citrate lyase acyl carrier protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=citD PE=3 S... CITD_ECO8A - Citrate lyase acyl carrier protein OS=Escherichia coli O8 (strain IAI1) GN=citD PE=3 SV=1 CITD_SHIF8 - Citrate lyase acyl carrier protein OS=Shigella flexneri serotype 5b (strain 8401) GN=citD PE=3 SV=1 gi\|217324878, gi... - gi\|217324878\|ref\|ZP_03440962.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. TW... gi\|187769754, gi... - gi\|187769754\|gb\|EDU33598.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4196... gi\|189360911, gi... - gi\|189360911\|gb\|EDU79330.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4486... gi\|124499346, gi... - gi\|124530183\|ref\|ZP_01700932.1\| citrate lyase acyl carrier protein [Escherichia coli B], gi\|12449934... gi\|189373673, gi... - gi\|189373673\|gb\|EDU92089.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC869]... gi\|168779108, gi... - gi\|189003006\|gb\|EDU71992.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4076... gi\|169888134, gi... - gi\|170080299\|ref\|YP_001729619.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli str. ... gi\|168798178, gi... - gi\|189379356\|gb\|EDU97772.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC508]... gi\|195936167 - gi\|195936167\|ref\|ZP_03081549.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 str. EC4024] CITD_ECOSM - Citrate lyase acyl carrier protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=citD PE=3 SV=1 CITD_ECO55 - Citrate lyase acyl carrier protein OS=Escherichia coli (strain 55989 / EAEC) GN=citD PE=3 SV=1 CITD_ECO45 - Citrate lyase acyl carrier protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=citD PE=3 SV=1 CITD_ECOLU - Citrate lyase acyl carrier protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=citD P... CITD_ECO7I - Citrate lyase acyl carrier protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=citD PE=3 SV=... gi\|237707410, gi... - gi\|237707410\|ref\|ZP_04537891.1\| citrate lyase subunit gamma [Escherichia sp. 3_2_53FAA], gi\|22689862... CITD_ECOBW - Citrate lyase acyl carrier protein OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=citD PE=3 S... CITD_ECOLC - Citrate lyase acyl carrier protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cit... gi\|242376393, gi... - gi\|251784120\|ref\|YP_002998424.1\| hypothetical protein B21_00574 [Escherichia coli BL21], gi\|24237639... gi\|254287486, gi... - gi\|254287486\|ref\|YP_003053234.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli BL21(... gi\|188017671, gi... - gi\|188017671\|gb\|EDU55793.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4113... gi\|168760233, gi... - gi\|189369148\|gb\|EDU87564.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4501... gi\|189358071, gi... - gi\|189358071\|gb\|EDU76490.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4401... gi\|89107484, gi\|... - gi\|89107484\|ref\|AP_001264.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli str. K-12... gi\|75258646, gi\|... - gi\|75258646\|ref\|ZP_00730053.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli E22], gi\|1930... gi\|188488204, gi... - gi\|75514711\|ref\|ZP_00736966.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli 53638], gi\|18... gi\|192957572, gi... - gi\|75236599\|ref\|ZP_00720687.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli E110019], gi\|... sp\|B7UKQ9\|CITD_ECO27 - Citrate lyase acyl carrier protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=citD PE=3... gi\|190907400, gi... - gi\|75240773\|ref\|ZP_00724680.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli F11], gi\|1911... CITD_SHISS - Citrate lyase acyl carrier protein OS=Shigella sonnei (strain Ss046) GN=citD PE=3 SV=1 gi\|194437463, gi... - gi\|83586948\|ref\|ZP_00925578.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli 101-1], gi\|19... gi\|75210755, gi\|... - gi\|75210755\|ref\|ZP_00710887.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli B171], gi\|194... gi\|75229498, gi\|... - gi\|75229498\|ref\|ZP_00716045.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli B7A], gi\|1911... CITD_ECO24 - Citrate lyase acyl carrier protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=citD PE=3... CITD_ECOHS - Citrate lyase acyl carrier protein OS=Escherichia coli O9:H4 (strain HS) GN=citD PE=3 SV=1 gi\|253972599, gi... - gi\|254160698\|ref\|YP_003043806.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli B str... gi\|254591184, gi... - gi\|254791784\|ref\|YP_003076621.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli O157:... CITD_ECO57 - Citrate lyase acyl carrier protein OS=Escherichia coli O157:H7 GN=citD PE=3 SV=1 gi\|12513516, gi\|... - gi\|15800332\|ref\|NP_286344.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 EDL933], gi\|12513... EG13543 - citrate lyase, acyl carrier (gamma) subunit / Citrate lyase acyl carrier protein EG13543 - citrate lyase, acyl carrier (gamma) subunit / Citrate lyase acyl carrier protein	158.0	[0..1]	[98..1]
CITD_SHIB3 - Citrate lyase acyl carrier protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ci...	157.0	[0..1]	[98..1]
CITD_SHIBS - Citrate lyase acyl carrier protein OS=Shigella boydii serotype 4 (strain Sb227) GN=citD PE=3 SV=1	156.0	[0..1]	[98..1]
gi\|194432526, gi... - gi\|83570448\|ref\|ZP_00921893.1\| COG3052: Citrate lyase, gamma subunit [Shigella dysenteriae 1012], gi...	152.0	[0..1]	[97..1]
CITD_LACC3 - Citrate lyase acyl carrier protein OS=Lactobacillus casei (strain ATCC 334) GN=citD PE=3 SV=1 gi\|227188126, gi... - gi\|227534236\|ref\|ZP_03964285.1\| citrate lyase acyl carrier protein gamma subunit [Lactobacillus para... CITD_LACCB - Citrate lyase acyl carrier protein OS=Lactobacillus casei (strain BL23) GN=citD PE=3 SV=1 gi\|224455096, gi... - gi\|239629779\|ref\|ZP_04672810.1\| citrate lyase subunit gamma [Lactobacillus paracasei subsp. paracase...	148.0	[0..1]	[97..1]
gi\|121550082, gi... - gi\|121585719\|ref\|ZP_01675514.1\| citrate lyase, gamma subunit [Vibrio cholerae 2740-80], gi\|121550082... CITD_VIBCH - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba ... gi\|153220742, gi... - gi\|153220742\|ref\|ZP_01951853.1\| citrate lyase, gamma subunit [Vibrio cholerae MAK 757], gi\|124120306... CITD_VIBCH - Citrate lyase acyl carrier protein OS=Vibrio cholerae GN=citD PE=3 SV=1 gi\|153817266, gi... - gi\|153817266\|ref\|ZP_01969933.1\| citrate lyase, gamma subunit [Vibrio cholerae NCTC 8457], gi\|1265121... gi\|229350705, gi... - gi\|229510740\|ref\|ZP_04400219.1\| citrate lyase beta chain [Vibrio cholerae B33], gi\|229350705\|gb\|EEO1... gi\|254285511, gi... - gi\|254285511\|ref\|ZP_04960475.1\| citrate lyase, gamma subunit [Vibrio cholerae AM-19226], gi\|19775294... CITD_VIBCM - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=citD PE=3 SV=1 gi\|229357811, gi... - gi\|229505588\|ref\|ZP_04395098.1\| citrate lyase beta chain [Vibrio cholerae BX 330286], gi\|229357811\|g... gi\|229349958, gi... - gi\|229513065\|ref\|ZP_04402531.1\| citrate lyase beta chain [Vibrio cholerae TMA 21], gi\|229349958\|gb\|E... gi\|229344576, gi... - gi\|229517861\|ref\|ZP_04407305.1\| citrate lyase beta chain [Vibrio cholerae RC9], gi\|229344576\|gb\|EEO0... gi\|229608606, gi... - gi\|229608606\|ref\|YP_002879254.1\| citrate lyase beta chain [Vibrio cholerae MJ-1236], gi\|229371261\|gb... gi\|75831963, gi\|... - gi\|75831963\|ref\|ZP_00761222.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae MO10], gi\|2548... gi\|125622442, gi... - gi\|75820948\|ref\|ZP_00750985.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae V51], gi\|25422...	148.0	[0..1]	[97..1]
gi\|254222155, gi... - gi\|75823902\|ref\|ZP_00753377.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae RC385], gi\|254... gi\|124123889, gi... - gi\|153800600\|ref\|ZP_01955186.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-3], gi\|124123889\|g... gi\|229339748, gi... - gi\|229523385\|ref\|ZP_04412792.1\| citrate lyase beta chain [Vibrio cholerae TM 11079-80], gi\|229339748... tr\|A2PP62\|A2PP62... - Citrate lyase acyl carrier protein OS=Vibrio cholerae GN=citD PE=3 SV=1, Citrate lyase acyl carrier ... gi\|148876205, gi... - gi\|153828251\|ref\|ZP_01980918.1\| citrate lyase, gamma subunit [Vibrio cholerae 623-39], gi\|148876205\|... gi\|149741804, gi... - gi\|153824586\|ref\|ZP_01977253.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-2], gi\|149741804\|g...	148.0	[0..1]	[97..1]
gi\|205324255, gi... - gi\|205324255\|gb\|EDZ12094.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... CITD1_SALTY - Citrate lyase acyl carrier protein 1 OS=Salmonella typhimurium GN=citD1 PE=3 SV=1 gi\|62179222, gi\|... - gi\|62179222\|ref\|YP_215639.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica serova... gi\|168231629, gi... - gi\|205334168\|gb\|EDZ20932.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|168236610, gi... - gi\|197290390\|gb\|EDY29746.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|205339968, gi... - gi\|205339968\|gb\|EDZ26732.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|161615169, gi... - gi\|161615169\|ref\|YP_001589134.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica se... gi\|206707892, gi... - gi\|207856089\|ref\|YP_002242740.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica se... gi\|213026456 - gi\|213026456\|ref\|ZP_03340903.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|213051873 - gi\|213051873\|ref\|ZP_03344751.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|213420966 - gi\|213420966\|ref\|ZP_03354032.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|238911574 - gi\|238911574\|ref\|ZP_04655411.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|197264053, gi... - gi\|197264053\|ref\|ZP_03164127.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enter... gi\|198244857, gi... - gi\|198244857\|ref\|YP_002214612.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. ente... gi\|200390637, gi... - gi\|200390637\|ref\|ZP_03217248.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enter... gi\|205351911, gi... - gi\|205351911\|ref\|YP_002225712.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica se... gi\|194408871, gi... - gi\|194450567\|ref\|YP_002044654.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica se... CITD1_SALTI - Citrate lyase acyl carrier protein 1 OS=Salmonella typhi GN=citD1 PE=3 SV=1 gi\|194469332, gi... - gi\|194469332\|ref\|ZP_03075316.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enter... CITD1_SALTY - Citrate lyase acyl carrier protein 1 OS=Salmonella typhimurium GN=citD1 PE=3 SV=1 gi\|194737133, gi... - gi\|194737133\|ref\|YP_002113740.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. ente... CITD_SALAR - Citrate lyase acyl carrier protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980... gi\|197213908, gi... - gi\|197250205\|ref\|YP_002145596.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. ente... gi\|168260866, gi... - gi\|205350077\|gb\|EDZ36708.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|195631702, gi... - gi\|195631702\|gb\|EDX50222.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|168818757, gi... - gi\|205344137\|gb\|EDZ30901.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. enterica ... gi\|194405085, gi... - gi\|194446422\|ref\|YP_002039863.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. ente... CITD1_SALTY - Citrate lyase acyl carrier protein 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|29142644, gi\|... - gi\|29142644\|ref\|NP_805986.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica serova... CITD1_SALTI - Citrate lyase acyl carrier protein 1 OS=Salmonella typhi GN=citD1 PE=3 SV=1 gi\|16759583 - gi\|16759583\|ref\|NP_455200.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica serova... gi\|224582456, gi... - gi\|224582456\|ref\|YP_002636254.1\| citrate lyase acyl carrier protein [Salmonella enterica subsp. ente... gi\|213425114 - gi\|213425114\|ref\|ZP_03357864.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|213580809 - gi\|213580809\|ref\|ZP_03362635.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|213648715 - gi\|213648715\|ref\|ZP_03378768.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser... gi\|214003312 - gi\|214003312\|ref\|ZP_03414047.1\| citrate lyase subunit gamma [Salmonella enterica subsp. enterica ser...	147.0	[0..1]	[98..1]
gi\|2734634 - gi\|2734634\|gb\|AAC28949.1\| citrate lyase gamma-subunit [Escherichia coli] gi\|2734634\|gb\|AA... - citrate lyase gamma-subunit [Escherichia coli]	146.0	[0..1]	[92..1]
CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) G... gi\|254997429 - gi\|254997429\|dbj\|BAH88030.1\| putative citrate lyase gamma-subunit [Streptococcus mutans NN2025] CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans GN=citD PE=3 SV=1	146.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINQPAVAG TLESGDVMIR IAPLDTQDID LQINSSVEKQ FGDAIRTTIL DVLARYNVRG  60
   61 VQLNVDDKGA LDCILHARLE ALLARASGIP ALPWEDCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.958607
Match:	PF04953.4
Description:	No description for PF04953.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits