YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655901, gi\|...
Organism:	synthetic construct
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655901, gi|....

Description	E-value	Query Range	Subject Range
gi\|109479399, gi... - gi\|157823401\|ref\|NP_001102184.1\| phosphatidylinositol glycan anchor biosynthesis, class H [Rattus no...	1.0E-76	[1..187]	[1..187]
gi\|60652811, gi\|... - gi\|60652811\|gb\|AAX29100.1\| phosphatidylinositol glycan class H [synthetic construct], gi\|60652809\|gb...	1.0E-76	[1..188]	[1..188]
gi\|109084024 - gi\|109084024\|ref\|XP_001107223.1\| PREDICTED: phosphatidylinositol glycan, class H isoform 2 [Macaca m...	7.0E-76	[1..188]	[1..188]
PIGH_MOUSE - Phosphatidylinositol N-acetylglucosaminyltransferase subunit H OS=Mus musculus GN=Pigh PE=2 SV=1	8.0E-76	[1..187]	[1..187]
PIGH_BOVIN - Phosphatidylinositol N-acetylglucosaminyltransferase subunit H OS=Bos taurus GN=PIGH PE=2 SV=1	3.0E-73	[1..188]	[1..188]
gi\|73964224 - gi\|73964224\|ref\|XP_854339.1\| PREDICTED: similar to Phosphatidylinositol N-acetylglucosaminyltransfer...	1.0E-59	[1..184]	[1..156]
gi\|50748316 - gi\|50748316\|ref\|XP_421190.1\| PREDICTED: similar to GPI-H [Gallus gallus]	3.0E-54	[3..187]	[2..186]
gi\|50540196, gi\|... - gi\|50540196\|ref\|NP_001002565.1\| phosphatidylinositol glycan anchor biosynthesis, class H [Danio reri...	3.0E-47	[1..182]	[1..181]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDERSFSDI CGGRLALQRR YYSPSCREFC LSCPRLSLRS LTAVTCTVWL AAYGLFTLCE  60
   61 NSMILSAAIF ITLLGLLGYL HFVKIDQETL LIIDSLGIQM TSSYASGKES TTFIEMGKVK 120
  121 DIVINEAIYM QKVIYYLCIL LKDPVEPHGI SQVVPVFQSA KPRLDCLIEV YRSCQEILAH 180
  181 QKATSTSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits