YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157927968, gi...
Organism:	synthetic construct
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157927968, gi....

Description	E-value	Query Range	Subject Range
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	4.0E-42	[1..115]	[1..115]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	4.0E-42	[1..115]	[1..115]
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3	2.0E-41	[1..115]	[1..115]
CCKN_RAT - Cholecystokinin OS=Rattus norvegicus GN=Cck PE=1 SV=1	7.0E-41	[1..115]	[1..115]
CCKN_MACFA - Cholecystokinin OS=Macaca fascicularis GN=CCK PE=1 SV=1	8.0E-41	[1..115]	[1..115]
gi\|69380 - pir\|\|GMPGCP cholecystokinin precursor - pig CCKN_PIG - Cholecystokinin OS=Sus scrofa GN=CCK PE=1 SV=1	1.0E-39	[1..115]	[1..114]
CCKN_BOVIN - Cholecystokinin OS=Bos taurus GN=CCK PE=1 SV=2	2.0E-39	[1..115]	[1..115]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	5.0E-36	[1..115]	[1..130]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2	2.0E-35	[1..115]	[1..130]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGVCLCVL MAVLAAGALT QPVPPADPAG SGLQRAEEAP RRQLRVSQRT DGESRAHLGA  60
   61 LLARYIQQAR KAPSGRMSIV KNLQNLDPSH RISDRDYMGW MDFGRRSAEE YEYPS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.275724
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits