YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56383238, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	49 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56383238, gi|....

Description	E-value	Query Range	Subject Range
gi\|62126981, gi\|... - gi\|62179348\|ref\|YP_215765.1\| hypothetical protein SC0778 [Salmonella enterica subsp. enterica serova... gi\|207856218, gi... - gi\|207856218\|ref\|YP_002242869.1\| hypothetical protein SEN0725 [Salmonella enterica subsp. enterica s... gi\|205352039, gi... - gi\|205352039\|ref\|YP_002225840.1\| hypothetical protein SG0758 [Salmonella enterica subsp. enterica se... gi\|199603431, gi... - gi\|200390986\|ref\|ZP_03217597.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_0906] [protein=hypothetical protein] [protein_id=YP_005236500.1] [location=845597..84584...	81.0	[0..1]	[48..35]
gi\|4062332 - dbj\|BAA35426.1\| unnamed protein product [Escherichia coli K12] gi\|26107127, gi\|... - gi\|26246728\|ref\|NP_752768.1\| hypothetical protein c0838 [Escherichia coli CFT073], gi\|26107127\|gb\|AA... gi\|24050780, gi\|... - ref\|NP_706479.1\| hypothetical protein SF0542 [Shigella flexneri 2a str. 301], gb\|AAN42186.1\| orf, c... gi\|91209790, gi\|... - gi\|91209790\|ref\|YP_539776.1\| hypothetical protein UTI89_C0759 [Escherichia coli UTI89], gi\|91071364\|... gi\|209918006, gi... - gi\|209918006\|ref\|YP_002292090.1\| hypothetical protein ECSE_0815 [Escherichia coli SE11], gi\|20991126...	76.0	[0..1]	[49..3]
gi\|110614167, gi... - gi\|110804619\|ref\|YP_688139.1\| hypothetical protein SFV_0578 [Shigella flexneri 5 str. 8401], gi\|1106...	75.0	[0..1]	[49..1]
gi\|204321045, gi... - gi\|204930051\|ref\|ZP_03221072.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198243269, gi... - gi\|198243269\|ref\|YP_002214745.1\| hypothetical protein SeD_A0875 [Salmonella enterica subsp. enterica... gi\|197243869, gi... - gi\|197265614\|ref\|ZP_03165688.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197249863, gi... - gi\|197249863\|ref\|YP_002145736.1\| hypothetical protein SeAg_B0816 [Salmonella enterica subsp. enteric... gi\|213427690 - gi\|213427690\|ref\|ZP_03360440.1\| hypothetical protein SentesTyphi_20134 [Salmonella enterica subsp. e... gi\|213423537 - gi\|213423537\|ref\|ZP_03356517.1\| hypothetical protein Salmonentericaenterica_39207 [Salmonella enteri... gi\|213161580 - gi\|213161580\|ref\|ZP_03347290.1\| hypothetical protein Salmoneentericaenterica_16807 [Salmonella enter... gi\|238913340 - gi\|238913340\|ref\|ZP_04657177.1\| hypothetical protein SentesTe_19746 [Salmonella enterica subsp. ente... gi\|213029754 - gi\|213029754\|ref\|ZP_03344201.1\| hypothetical protein Salmonelentericaenterica_49511 [Salmonella ente... gi\|168820085, gi... - gi\|205343257\|gb\|EDZ30021.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168466364, gi... - gi\|195630896\|gb\|EDX49482.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168263726, gi... - gi\|205347776\|gb\|EDZ34407.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205339974, gi... - gi\|205339974\|gb\|EDZ26738.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194711151, gi... - gi\|194735649\|ref\|YP_002113873.1\| hypothetical protein SeSA_A0930 [Salmonella enterica subsp. enteric... gi\|194469198, gi... - gi\|194469198\|ref\|ZP_03075182.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194449734, gi... - gi\|194449734\|ref\|YP_002044808.1\| hypothetical protein SeHA_C0907 [Salmonella enterica subsp. enteric... gi\|194401007, gi... - gi\|194442344\|ref\|YP_002040016.1\| hypothetical protein SNSL254_A0844 [Salmonella enterica subsp. ente... gi\|213977631 - gi\|213977631\|ref\|ZP_03404890.1\| hypothetical protein Salmonellaentericaenterica_25239 [Salmonella en... gi\|213854592 - gi\|213854592\|ref\|ZP_03382832.1\| hypothetical protein SentesT_10984 [Salmonella enterica subsp. enter... gi\|213647027 - gi\|213647027\|ref\|ZP_03377080.1\| hypothetical protein SentesTy_06786 [Salmonella enterica subsp. ente... gi\|213580933 - gi\|213580933\|ref\|ZP_03362759.1\| hypothetical protein SentesTyph_06909 [Salmonella enterica subsp. en... gi\|214001898 - gi\|214001898\|ref\|ZP_03412633.1\| hypothetical protein Salmonellentericaenterica_16337 [Salmonella ent... gi\|25511775, gi\|... - gi\|25511775\|pir\|\|AB0595 probable exported protein ybhT [imported] - Salmonella enterica subsp. enter... gi\|161364350, gi... - gi\|161614986\|ref\|YP_001588951.1\| hypothetical protein SPAB_02740 [Salmonella enterica subsp. enteric... gi\|16764144, gi\|... - gi\|16764144\|ref\|NP_459759.1\| hypothetical protein STM0780 [Salmonella typhimurium LT2], gi\|16419286\|... gi\|168236704, gi... - gi\|197290102\|gb\|EDY29459.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205334741, gi... - gi\|205334741\|gb\|EDZ21505.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|29138153, gi\|... - gi\|29142522\|ref\|NP_805864.1\| hypothetical protein t2107 [Salmonella enterica subsp. enterica serovar... gi\|205327697, gi... - gi\|205327697\|gb\|EDZ14461.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16759705 - gi\|16759705\|ref\|NP_455322.1\| hypothetical protein STY0813 [Salmonella enterica subsp. enterica serov... gi\|56128374, gi\|... - gi\|56414117\|ref\|YP_151192.1\| hypothetical protein SPA1972 [Salmonella enterica subsp. enterica serov... gi\|205324651, gi... - gi\|205324651\|gb\|EDZ12490.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	72.0	[0..1]	[48..1]
gi\|37525427, gi\|... - gi\|37525427\|ref\|NP_928771.1\| hypothetical protein plu1475 [Photorhabdus luminescens subsp. laumondii...	60.0	[0..1]	[44..1]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELLKSLVF AVIMVPVVMA IILGLIYGLG EVFNIFSGVG KKDQPGQNH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits