YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194427339, gi...
Organism:	Escherichia coli B171
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194427339, gi....

Description	E-value	Query Range	Subject Range
gi\|26109221, gi\|... - gi\|26248815\|ref\|NP_754855.1\| ethanolamine utilization protein eutL [Escherichia coli CFT073], gi\|261... gi\|110344212, gi... - gi\|110642620\|ref\|YP_670350.1\| ethanolamine utilization protein EutL [Escherichia coli 536], gi\|11034... gi\|227887484, gi... - gi\|227887484\|ref\|ZP_04005289.1\| ethanolamine utilization protein EutL [Escherichia coli 83972], gi\|2... gi\|237704962, gi... - gi\|237704962\|ref\|ZP_04535443.1\| ethanolamine utilization protein EutL [Escherichia sp. 3_2_53FAA], g... gi\|190906785, gi... - gi\|75240097\|ref\|ZP_00724056.1\| COG4816: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|218559384, gi... - gi\|218559384\|ref\|YP_002392297.1\| putative carboxysome-related structural protein with putative role ... gi\|91073351, gi\|... - gi\|91211777\|ref\|YP_541763.1\| ethanolamine utilization protein EutL [Escherichia coli UTI89], gi\|9107... gi\|117624644, gi... - gi\|117624644\|ref\|YP_853557.1\| ethanolamine utilization protein EutL [Escherichia coli APEC O1], gi\|1...	308.0	[0..1]	[219..1]
gi\|242378047, gi... - gi\|251785774\|ref\|YP_003000078.1\| hypothetical protein B21_02301 [Escherichia coli BL21], gi\|24237804... gi\|253974323, gi... - gi\|254162422\|ref\|YP_003045530.1\| predicted carboxysome structural protein with predicted role in eth... gi\|253772662, gi... - gi\|254289183\|ref\|YP_003054931.1\| predicted carboxysome structural protein with predicted role in eth... gi\|194423352, gi... - gi\|83586904\|ref\|ZP_00925535.1\| COG4816: Ethanolamine utilization protein [Escherichia coli 101-1], g...	307.0	[0..1]	[219..1]
gi\|208808812, gi... - gi\|208808812\|ref\|ZP_03251149.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|13362780, gi\|... - gi\|15832564\|ref\|NP_311337.1\| hypothetical protein ECs3310 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208814163, gi... - gi\|208814163\|ref\|ZP_03255492.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|208821204, gi... - gi\|208821204\|ref\|ZP_03261524.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|209400275, gi... - gi\|209400275\|ref\|YP_002271916.1\| putative ethanolamine utilization protein EutL [Escherichia coli O1... gi\|168778404, gi... - gi\|189003638\|gb\|EDU72624.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|189372341, gi... - gi\|189372341\|gb\|EDU90757.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|209763980, gi... - pir\|\|A85887 hypothetical protein Z3704 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|168798809, gi... - gi\|189378544\|gb\|EDU96960.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|195936590 - gi\|195936590\|ref\|ZP_03081972.1\| hypothetical protein EscherichcoliO157_09030 [Escherichia coli O157:... gi\|12516820, gi\|... - gi\|15802970\|ref\|NP_289000.1\| hypothetical protein Z3704 [Escherichia coli O157:H7 EDL933], gi\|125168... gi\|189356576, gi... - gi\|189356576\|gb\|EDU74995.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|13362780, gi\|... - gi\|15832564\|ref\|NP_311337.1\| hypothetical protein ECs3310 [Escherichia coli O157:H7], gi\|13362780\|db... gi\|168761047, gi... - gi\|189368480\|gb\|EDU86896.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|189362319, gi... - gi\|189362319\|gb\|EDU80738.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|187770698, gi... - gi\|187770698\|gb\|EDU34542.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|188017089, gi... - gi\|188017089\|gb\|EDU55211.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|254593792, gi... - gi\|254794392\|ref\|YP_003079229.1\| predicted carboxysome structural protein with predicted role in eth... gi\|217319813, gi... - gi\|217327446\|ref\|ZP_03443529.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15...	305.0	[0..1]	[219..1]
gi\|81241981, gi\|... - gi\|82777833\|ref\|YP_404182.1\| hypothetical protein SDY_2637 [Shigella dysenteriae Sd197], gi\|81241981...	303.0	[0..1]	[219..1]
EUTL_ECOLI - Ethanolamine utilization protein eutL - Escherichia coli gi\|169889883, gi... - gi\|170082048\|ref\|YP_001731368.1\| carboxysome structural protein with role in ethanolamine utilizatio... gi\|85675406, gi\|... - gi\|89109253\|ref\|AP_003033.1\| predicted carboxysome structural protein with predicted role in ethanol... gi\|238901602, gi... - gi\|238901602\|ref\|YP_002927398.1\| putative carboxysome structural protein with putative role in ethan... EG14171 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... EG14171 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme...	303.0	[0..1]	[219..1]
gi\|227553431, gi... - gi\|227553431\|ref\|ZP_03983480.1\| ethanolamine utilization protein EutL [Enterococcus faecalis HH22], ... gi\|227518815, gi... - gi\|227518815\|ref\|ZP_03948864.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX0104]... gi\|238856523, gi... - gi\|238856523\|ref\|ZP_04646789.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TUSoD E... gi\|29376185, gi\|... - gi\|29376185\|ref\|NP_815339.1\| ethanolamine utilization protein EutL [Enterococcus faecalis V583], gi\|... gi\|229549950, gi... - gi\|229549950\|ref\|ZP_04438675.1\| ethanolamine utilization protein EutL [Enterococcus faecalis ATCC 29... gi\|229545760, gi... - gi\|229545760\|ref\|ZP_04434485.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX1332]...	301.0	[0..5]	[216..4]
EUTL_SALTY - Ethanolamine utilization protein eutL OS=Salmonella typhimurium GN=eutL PE=3 SV=1 lcl\|NC_016856.1_... - [gene=eutL] [protein=putative carboxysome structural protein] [protein_id=YP_005238542.1] [location=... gi\|197211639, gi... - gi\|197247936\|ref\|YP_002147410.1\| putative ethanolamine utilization protein EutL [Salmonella enterica... gi\|197265112, gi... - gi\|197265112\|ref\|ZP_03165186.1\| putative ethanolamine utilization protein EutL [Salmonella enterica ... gi\|197939740, gi... - gi\|198245224\|ref\|YP_002216526.1\| putative ethanolamine utilization protein EutL [Salmonella enterica... gi\|200387962, gi... - gi\|200387962\|ref\|ZP_03214574.1\| putative ethanolamine utilization protein EutL [Salmonella enterica ... gi\|205345081, gi... - gi\|205345081\|gb\|EDZ31845.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... gi\|194403843, gi... - gi\|194445180\|ref\|YP_002041716.1\| putative ethanolamine utilization protein EutL [Salmonella enterica... gi\|194450682, gi... - gi\|194450682\|ref\|YP_002046521.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. e... gi\|194470533, gi... - gi\|194470533\|ref\|ZP_03076517.1\| putative ethanolamine utilization protein EutL [Salmonella enterica ... gi\|168231999, gi... - gi\|205333692\|gb\|EDZ20456.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... gi\|238912871 - gi\|238912871\|ref\|ZP_04656708.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... gi\|168243225, gi... - gi\|205337583\|gb\|EDZ24347.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. enteri... gi\|168261513, gi... - gi\|205349567\|gb\|EDZ36198.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... gi\|168466804, gi... - gi\|195630765\|gb\|EDX49357.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... gi\|62181024, gi\|... - gi\|62181024\|ref\|YP_217441.1\| putative carboxysome structural protein, ethanolamine utilization [Salm... gi\|161612798, gi... - gi\|161612798\|ref\|YP_001586763.1\| hypothetical protein SPAB_00497 [Salmonella enterica subsp. enteric... gi\|205325276, gi... - gi\|205325276\|gb\|EDZ13115.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... gi\|167991754, gi... - gi\|205329862\|gb\|EDZ16626.1\| putative ethanolamine utilization protein EutL [Salmonella enterica subs... EUTL_SALTI - Ethanolamine utilization protein eutL OS=Salmonella typhi GN=eutL PE=3 SV=1 gi\|213857591 - gi\|213857591\|ref\|ZP_03384562.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... EUTL_SALTI - Ethanolamine utilization protein EutL OS=Salmonella typhi GN=eutL PE=3 SV=1 gi\|214003173 - gi\|214003173\|ref\|ZP_03413908.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... gi\|16761374 - gi\|16761374\|ref\|NP_456991.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. enter... gi\|213424316 - gi\|213424316\|ref\|ZP_03357148.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... gi\|213581791 - gi\|213581791\|ref\|ZP_03363617.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... EUTL_SALTY - Ethanolamine utilization protein EutL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|213621951 - gi\|213621951\|ref\|ZP_03374734.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... EUTL_SALTY - Ethanolamine utilization protein EutL OS=Salmonella typhimurium GN=eutL PE=3 SV=1 gi\|29140929, gi\|... - gi\|29140929\|ref\|NP_804271.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. enter... gi\|213646840 - gi\|213646840\|ref\|ZP_03376893.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... gi\|205353561, gi... - gi\|205353561\|ref\|YP_002227362.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. e... gi\|207857868, gi... - gi\|207857868\|ref\|YP_002244519.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. e... gi\|213025611 - gi\|213025611\|ref\|ZP_03340058.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en... gi\|213162118 - gi\|213162118\|ref\|ZP_03347828.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. en...	301.0	[0..1]	[219..1]
gi\|56126917, gi\|... - gi\|56412660\|ref\|YP_149735.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. enter... gi\|197093071, gi... - gi\|197361595\|ref\|YP_002141231.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. e...	299.0	[0..1]	[219..1]
gi\|110801147, gi... - gi\|110801147\|ref\|YP_695342.1\| ethanolamine utilization protein EutL [Clostridium perfringens ATCC 13... gi\|170712714, gi... - gi\|170712714\|gb\|EDT24896.1\| ethanolamine utilization protein EutL [Clostridium perfringens B str. AT... gi\|168204926, gi... - gi\|170663382\|gb\|EDT16065.1\| ethanolamine utilization protein EutL [Clostridium perfringens E str. JG... gi\|182624995, gi... - gi\|182624995\|ref\|ZP_02952773.1\| ethanolamine utilization protein EutL [Clostridium perfringens D str... gi\|182381621, gi... - gi\|182381621\|gb\|EDT79100.1\| ethanolamine utilization protein EutL [Clostridium perfringens NCTC 8239... gi\|170715982, gi... - gi\|170715982\|gb\|EDT28164.1\| ethanolamine utilization protein EutL [Clostridium perfringens CPE str. ... gi\|18309882, gi\|... - gi\|18309882\|ref\|NP_561816.1\| ethanolamine utilization protein [Clostridium perfringens str. 13], gi\|...	298.0	[0..5]	[216..4]
gi\|16800210 - gi\|16800210\|ref\|NP_470478.1\| hypothetical protein lin1141 [Listeria innocua Clip11262] gi\|16413600, gi\|... - pir\|\|AD1575 probable carboxysome structural protein (eutL) homolog lin1141 [imported] - Listeria inn...	293.0	[0..5]	[217..4]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALDLIRPS VTAMRVIASV NAEFARELKL PPHIRSLGLI SADSDDVTYI AADEATKQAM  60
   61 VEVVYGRSLY AGAAHGPSPT AGEVLIMLGG PNPAEVRAGL DAMVAHIENG AAFQWANDAE 120
  121 NTAFLAHVVS RTGSYLSSTA G

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.42
Match:	2a1bA
Description:	Carboxysome shell protein ccmK2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [142-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITLGDPMAYL VAPPLEATYG IDAALKSADV QLVTYVPPPS ETNYSAAFLT GSQAACKAAC  60
   61 NAFTDAVLEI ARNPIQRA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.481486
Match:	PF00936.10
Description:	No description for PF00936.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits