YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75514194, gi\|...
Organism:	Escherichia coli 53638
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75514194, gi|....

Description	E-value	Query Range	Subject Range
RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALTY, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1, Methylt... RSMG_SALCH, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1, Methyl... RSMG_SALTI, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1, Methyltransfe... GIDB_SALPA, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A GN=rsmG PE=3 SV=1, Methylt... RSMG_SALHS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella heidelberg (strain SL476) GN=rsmG PE=3... RSMG_SALNS - Ribosomal RNA small subunit methyltransferase G OS=Salmonella newport (strain SL254) GN=rsmG PE=3 SV... RSMG_SALPK - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain AKU_12601) GN=rsmG... gi\|197240084, gi... - gi\|197261829\|ref\|ZP_03161903.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... gi\|205327328, gi... - gi\|205327328\|gb\|EDZ14092.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168823140, gi... - gi\|205340562\|gb\|EDZ27326.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... gi\|168245183, gi... - gi\|205336052\|gb\|EDZ22816.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica ser... RSMG_SALTI - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhi GN=rsmG PE=3 SV=1 gi\|16762453 - gi\|16762453\|ref\|NP_458070.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|29139577, gi\|... - gi\|29143941\|ref\|NP_807283.1\| glucose-inhibited division protein B [Salmonella enterica subsp. enteri... gi\|213850448 - gi\|213850448\|ref\|ZP_03381346.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPB - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis GN=rsmG PE=3 SV=1 gi\|199605859, gi... - gi\|200388761\|ref\|ZP_03215373.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enterica... RSMG_SALTY - Ribosomal RNA small subunit methyltransferase G OS=Salmonella typhimurium GN=rsmG PE=3 SV=1 RSMG_SALDC - Ribosomal RNA small subunit methyltransferase G OS=Salmonella dublin (strain CT_02021853) GN=rsmG PE... RSMG_SALCH - Ribosomal RNA small subunit methyltransferase G OS=Salmonella choleraesuis (strain SC-B67) GN=rsmG P... gi\|213649866 - gi\|213649866\|ref\|ZP_03379919.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... RSMG_SALPA - Ribosomal RNA small subunit methyltransferase G OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... gi\|213052662 - gi\|213052662\|ref\|ZP_03345540.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent...	174.0	[0..1]	[207..1]
RSMG_SHIFL - Ribosomal RNA small subunit methyltransferase G OS=Shigella flexneri GN=rsmG PE=3 SV=1 gi\|24054303, gi\|... - gi\|24115043\|ref\|NP_709553.1\| glucose-inhibited division protein B [Shigella flexneri 2a str. 301], g...	172.0	[0..1]	[207..1]
gi\|224470196, gi... - gi\|224585668\|ref\|YP_002639467.1\| glucose-inhibited division protein B [Salmonella enterica subsp. en... gi\|213579758 - gi\|213579758\|ref\|ZP_03361584.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=gidB] [protein=glucose-inhibited division protein B] [protein_id=YP_005240142.1] [location=com... gi\|213026622 - gi\|213026622\|ref\|ZP_03341069.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... gi\|39546379 - gi\|39546379\|ref\|NP_462772.2\| glucose-inhibited division protein B [Salmonella typhimurium LT2] gi\|206710899, gi... - gi\|207859096\|ref\|YP_002245747.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enteric...	172.0	[0..3]	[207..5]
RSMG_SHIDS - Ribosomal RNA small subunit methyltransferase G OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	171.0	[0..1]	[207..1]
gi\|194420603, gi... - gi\|83571328\|ref\|ZP_00922768.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	169.0	[0..1]	[207..1]
RSMG_PHOPR - Ribosomal RNA small subunit methyltransferase G OS=Photobacterium profundum (strain SS9) GN=rsmG PE=... RSMG_PHOPR, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Photobacterium profundum GN=rsmG PE=3 SV=1, Methy...	169.0	[0..1]	[206..1]
RSMG_IDILO - Ribosomal RNA small subunit methyltransferase G OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM ... RSMG_IDILO, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Idiomarina loihiensis GN=rsmG PE=3 SV=1, Methyltr...	169.0	[0..1]	[205..1]
gi\|165926220, gi... - gi\|165926220\|ref\|ZP_02222052.1\| methyltransferase GidB [Yersinia pestis biovar Orientalis str. F1991... gi\|165991520, gi... - gi\|166009598\|ref\|ZP_02230496.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. E1979001... gi\|166205654, gi... - gi\|166213356\|ref\|ZP_02239391.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. B4200300... gi\|167401525, gi... - gi\|167401525\|ref\|ZP_02307019.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. UG05-045... RSMG_YERPG - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rs... RSMG_YERP3 - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype O:1b (strain... GIDB_YERPS, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis GN=rsmG PE=3 SV=1, Me... gi\|149290345, gi... - gi\|150260937\|ref\|ZP_01917665.1\| glucose inhibited division protein B [Yersinia pestis CA88-4125], gi... RSMG_YERPP - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis (strain Pestoides F) GN=rsmG PE=3... RSMG_YERPA - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=r... RSMG_YERPN - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=... RSMG_YERPS - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype I (strain IP... gi\|218931105, gi... - gi\|218931105\|ref\|YP_002348980.1\| 16S rRNA methyltransferase GidB [Yersinia pestis CO92], gi\|16124237... gi\|89104516, gi\|... - gi\|89104516\|ref\|ZP_01177057.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|229839839, gi... - gi\|229839839\|ref\|ZP_04459998.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167422855, gi... - gi\|167422855\|ref\|ZP_02314608.1\| methyltransferase GidB [Yersinia pestis biovar Orientalis str. MG05-... gi\|229691262, gi... - gi\|229841923\|ref\|ZP_04462079.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167425517, gi... - gi\|167425517\|ref\|ZP_02317270.1\| methyltransferase GidB [Yersinia pestis biovar Mediaevalis str. K197... gi\|229896800, gi... - gi\|229896800\|ref\|ZP_04511963.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167468639 - gi\|167468639\|ref\|ZP_02333343.1\| glucose-inhibited division protein B [Yersinia pestis FV-1] RSMG_YERPB - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype IB (strain P... RSMG_YERPE - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis GN=rsmG PE=3 SV=1	169.0	[0..1]	[203..1]
gi\|90325213, gi\|... - gi\|90413744\|ref\|ZP_01221732.1\| glucose-inhibited division protein B [Photobacterium profundum 3TCK],...	168.0	[0..1]	[206..1]
gi\|90437662, gi\|... - gi\|90581141\|ref\|ZP_01236940.1\| glucose-inhibited division protein B [Vibrio angustum S14], gi\|904376...	168.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKLSLLLK DAGISLTDHQ KNQLIAYVNM LHKWNKAYNL TSVRDPNEML VRHILDSIVV  60
   61 APYLQGERFI DVGTGPGLPG IPLSIVRPEA HFTLLDSLGK RVRFLRQVQH ELKLENIEPV 120
  121 QSRVEEFPSE PPFDGVISRA FASLNDMVSW CHHLPGEQGR FYALKGQMPE DEIALLPEEY 180
  181 QVESVVKLQV PALDGERHLV VIKANKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1jsxA
Description:	Glucose-inhibited division protein B (GidB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
rRNA (guanine-N2-)-methyltransferase activity	0.427131446117391	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: