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View Structure Prediction Details

Protein: gi|89110269, gi|...
Organism: Escherichia coli str. K-12 substr. W3110
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89110269, gi|....

Description E-value Query
Range
Subject
Range
ATP6_SALCH - ATP synthase subunit a OS=Salmonella choleraesuis (strain SC-B67) GN=atpB PE=3 SV=1
gi|238913124 - gi|238913124|ref|ZP_04656961.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
ATP6_SALPA - ATP synthase subunit a OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpB PE=3 SV=1
ATP6_SALCH - ATP synthase subunit a OS=Salmonella choleraesuis GN=atpB PE=3 SV=1
ATP6_SALTY - ATP synthase subunit a OS=Salmonella typhimurium GN=atpB PE=3 SV=1
ATP6_SALA4 - ATP synthase subunit a OS=Salmonella agona (strain SL483) GN=atpB PE=3 SV=1
ATP6_SALSV - ATP synthase subunit a OS=Salmonella schwarzengrund (strain CVM19633) GN=atpB PE=3 SV=1
gi|194458415, gi... - gi|194472051|ref|ZP_03078035.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica sero...
ATP6_SALHS - ATP synthase subunit a OS=Salmonella heidelberg (strain SL476) GN=atpB PE=3 SV=1
gi|29143943, gi|... - gi|29143943|ref|NP_807285.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica serova...
gi|200388972, gi... - gi|200388972|ref|ZP_03215584.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica sero...
gi|16762455 - gi|16762455|ref|NP_458072.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica serova...
ATP6_SALDC - ATP synthase subunit a OS=Salmonella dublin (strain CT_02021853) GN=atpB PE=3 SV=1
ATP6_SALTI - ATP synthase subunit a OS=Salmonella typhi GN=atpB PE=3 SV=1
ATP6_SALPK - ATP synthase subunit a OS=Salmonella paratyphi A (strain AKU_12601) GN=atpB PE=3 SV=1
ATP6_SALTY - ATP synthase subunit a OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpB PE=3 ...
gi|197265871, gi... - gi|197265871|ref|ZP_03165945.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica sero...
gi|197287676, gi... - gi|197287676|gb|EDY27067.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
gi|205331669, gi... - gi|205331669|gb|EDZ18433.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
gi|205327323, gi... - gi|205327323|gb|EDZ14087.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
ATP6_SALPB - ATP synthase subunit a OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpB PE=3 SV=1
ATP6_SALNS - ATP synthase subunit a OS=Salmonella newport (strain SL254) GN=atpB PE=3 SV=1
gi|168823136, gi... - gi|205340561|gb|EDZ27325.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
gi|168464794, gi... - gi|195632259|gb|EDX50743.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
ATP6_SALPB - ATP synthase subunit a OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpB PE=3 SV=1
gi|205348284, gi... - gi|205348284|gb|EDZ34915.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica serovar ...
gi|81416159 - gi|81416159|sp|Q7CPE3.1|ATP6_SALTY RecName: Full=ATP synthase subunit a; AltName: Full=F-ATPase subu...
ATP6_SALPA - ATP synthase subunit a OS=Salmonella paratyphi A GN=atpB PE=3 SV=1
gi|75479642 - gi|75479642|sp|Q57HX3.1|ATP6_SALCH RecName: Full=ATP synthase subunit a; AltName: Full=F-ATPase subu...
ATP6_SALPC - ATP synthase subunit a OS=Salmonella paratyphi C (strain RKS4594) GN=atpB PE=3 SV=1
gi|81628043 - gi|81628043|sp|Q8XGC2.1|ATP6_SALTI RecName: Full=ATP synthase subunit a; AltName: Full=F-ATPase subu...
gi|213052664 - gi|213052664|ref|ZP_03345542.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
ATP6_SALEP - ATP synthase subunit a OS=Salmonella enteritidis PT4 (strain P125109) GN=atpB PE=3 SV=1
lcl|NC_016856.1_... - [gene=atpB] [protein=F0F1 ATP synthase subunit A] [protein_id=YP_005240139.1] [location=complement(4...
ATP6_SALG2 - ATP synthase subunit a OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=atpB PE=3 SV=1
gi|204928835, gi... - gi|204928835|ref|ZP_03220034.1| ATP synthase F0, A subunit [Salmonella enterica subsp. enterica sero...
gi|214001330 - gi|214001330|ref|ZP_03412065.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
gi|213649864 - gi|213649864|ref|ZP_03379917.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
gi|213427464 - gi|213427464|ref|ZP_03360214.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
gi|213418552 - gi|213418552|ref|ZP_03351618.1| F0F1 ATP synthase subunit A [Salmonella enterica subsp. enterica ser...
208.0 [0..1] [271..1]
gi|254847266, gi... - gi|75829191|ref|ZP_00758503.1| COG0356: F0F1-type ATP synthase, subunit a [Vibrio cholerae MO10], gi...
ATP6_VIBC3 - ATP synthase subunit a OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O39...
gi|116219392, gi... - gi|75818738|ref|ZP_00748866.1| COG0356: F0F1-type ATP synthase, subunit a [Vibrio cholerae V51], gi|...
gi|121729381, gi... - gi|75814914|ref|ZP_00745454.1| COG0356: F0F1-type ATP synthase, subunit a [Vibrio cholerae V52], gi|...
gi|121591533, gi... - gi|121591533|ref|ZP_01678796.1| ATP synthase F0, A subunit [Vibrio cholerae 2740-80], gi|121546618|g...
gi|124116207, gi... - gi|153212981|ref|ZP_01948575.1| ATP synthase F0, A subunit [Vibrio cholerae 1587], gi|124116207|gb|E...
gi|153820049, gi... - gi|153820049|ref|ZP_01972716.1| ATP synthase F0, A subunit [Vibrio cholerae NCTC 8457], gi|126509406...
gi|153821977, gi... - gi|229508635|ref|ZP_04398130.1| ATP synthase A chain [Vibrio cholerae B33], gi|229354349|gb|EEO19277...
ATP6_VIBCM - ATP synthase subunit a OS=Vibrio cholerae serotype O1 (strain M66-2) GN=atpB PE=3 SV=1
gi|229508283, gi... - gi|229508283|ref|ZP_04397787.1| ATP synthase A chain [Vibrio cholerae BX 330286], gi|229354556|gb|EE...
gi|229347063, gi... - gi|229515963|ref|ZP_04405420.1| ATP synthase A chain [Vibrio cholerae TMA 21], gi|229347063|gb|EEO12...
gi|229517149, gi... - gi|229517149|ref|ZP_04406595.1| ATP synthase A chain [Vibrio cholerae RC9], gi|229346212|gb|EEO11184...
gi|229342753, gi... - gi|229520159|ref|ZP_04409586.1| ATP synthase A chain [Vibrio cholerae TM 11079-80], gi|229342753|gb|...
gi|229606557, gi... - gi|229606557|ref|YP_002877205.1| ATP synthase A chain [Vibrio cholerae MJ-1236], gi|229369212|gb|ACQ...
gi|150422987, gi... - gi|254291142|ref|ZP_04961939.1| ATP synthase F0, A subunit [Vibrio cholerae AM-19226], gi|197751562|...
ATP6_VIBCH - ATP synthase subunit a OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=a...
gi|153827198, gi... - gi|153827198|ref|ZP_01979865.1| ATP synthase F0, A subunit [Vibrio cholerae MZO-2], gi|149738921|gb|...
ATP6_VIBCH - ATP synthase subunit a OS=Vibrio cholerae GN=atpB PE=3 SV=1
206.0 [0..3] [271..5]
gi|148143 - gi|148143|gb|AAA24740.1| ATPase, a subunit (EC 3.6.1.3)
204.0 [0..1] [271..1]
ATP6_SHIDS - ATP synthase subunit a OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpB PE=3 SV=1
204.0 [0..1] [271..1]
gi|24054300, gi|... - gi|24115041|ref|NP_709551.1| F0F1 ATP synthase subunit A [Shigella flexneri 2a str. 301], gi|2405430...
gi|30043218, gi|... - gi|30064957|ref|NP_839128.1| F0F1 ATP synthase subunit A [Shigella flexneri 2a str. 2457T], gi|30043...
ATP6_SHIFL - ATP synthase subunit a OS=Shigella flexneri GN=atpB PE=3 SV=1
ATP6_SHIF8 - ATP synthase subunit a OS=Shigella flexneri serotype 5b (strain 8401) GN=atpB PE=3 SV=1
204.0 [0..1] [271..1]
gi|6625697|gb|AA... - ATP synthase subunit a [Salmonella typhimurium]
gi|6625697 - gi|6625697|gb|AAF19356.1|AF188265_2 ATP synthase subunit a [Salmonella typhimurium]
204.0 [0..1] [271..1]
ATP6_ECOUT - ATP synthase subunit a OS=Escherichia coli (strain UTI89 / UPEC) GN=atpB PE=3 SV=1
gi|191170564, gi... - gi|191170564|ref|ZP_03032117.1| ATP synthase F0, A subunit [Escherichia coli F11], gi|190909372|gb|E...
ATP6_ECO27 - ATP synthase subunit a OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpB PE=3 SV=1
ATP6_ECOSM - ATP synthase subunit a OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpB PE=3 SV=1
ATP6_ECOL6 - ATP synthase subunit a OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpB PE=3 S...
ATP6_ECOK1 - ATP synthase subunit a OS=Escherichia coli O1:K1 / APEC GN=atpB PE=3 SV=1
ATP6_ECOL5 - ATP synthase subunit a OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpB PE=3 SV=1
gi|227839238, gi... - gi|227883960|ref|ZP_04001765.1| H(+)-transporting two-sector ATPase [Escherichia coli 83972], gi|227...
sp|B7UMK3|ATP6_ECO27 - ATP synthase subunit a OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpB PE=3 SV=1
gi|237703539, gi... - gi|237703539|ref|ZP_04534020.1| ATP synthase subunit A [Escherichia sp. 3_2_53FAA], gi|226902803|gb|...
ATP6_ECOLU - ATP synthase subunit a OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpB PE=3 SV=1
ATP6_ECOL6 - ATP synthase subunit a OS=Escherichia coli O6 GN=atpB PE=3 SV=1
ATP6_ECO81 - ATP synthase subunit a OS=Escherichia coli O81 (strain ED1a) GN=atpB PE=3 SV=1
ATP6_ECO7I - ATP synthase subunit a OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpB PE=3 SV=1
ATP6_ESCF3 - ATP synthase subunit a OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=at...
ATP6_ECO45 - ATP synthase subunit a OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpB PE=3 SV=1
204.0 [0..1] [271..1]
ATP6_VIBAL - ATP synthase subunit a OS=Vibrio alginolyticus GN=atpB PE=3 SV=1
gi|91226232, gi|... - gi|91226232|ref|ZP_01261072.1| F0F1 ATP synthase subunit A [Vibrio alginolyticus 12G01], gi|91189243...
gi|254229971, gi... - gi|75855550|ref|ZP_00763198.1| COG0356: F0F1-type ATP synthase, subunit a [Vibrio sp. Ex25], gi|2542...
202.0 [0..3] [270..5]
gi|149748126, gi... - gi|153838503|ref|ZP_01991170.1| ATP synthase a chain [Vibrio parahaemolyticus AQ3810], gi|149748126|...
ATP6_VIBPA - ATP synthase subunit a OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpB PE=3 ...
ATP6_VIBPA - ATP synthase subunit a OS=Vibrio parahaemolyticus GN=atpB PE=3 SV=1
202.0 [0..3] [270..5]
ATP6_YERPB - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpB PE=3 SV=1
ATP6_YERPY - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpB PE=3 SV=1
gi|229839837, gi... - gi|229839837|ref|ZP_04459996.1| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis...
gi|229896798, gi... - gi|229896798|ref|ZP_04511961.1| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis...
gi|229691260, gi... - gi|229841921|ref|ZP_04462077.1| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis...
ATP6_YERP3 - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpB PE=3 S...
gi|149290347, gi... - gi|150260939|ref|ZP_01917667.1| ATP synthase subunit B protein [Yersinia pestis CA88-4125], gi|14929...
ATP6_YERPP - ATP synthase subunit a OS=Yersinia pestis (strain Pestoides F) GN=atpB PE=3 SV=1
ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis GN=atpB PE=3 SV=1
ATP6_YERPN - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpB PE=3 SV=1
ATP6_YERPA - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpB PE=3 SV=1
gi|21961157, gi|... - gi|22128009|ref|NP_671432.1| F0F1 ATP synthase subunit A [Yersinia pestis KIM], gi|21961157|gb|AAM87...
ATP6_YERPE - ATP synthase subunit a OS=Yersinia pestis GN=atpB PE=3 SV=1
ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=atpB PE=3 SV=1
gi|45443757, gi|... - gi|45443757|ref|NP_995296.1| F0F1 ATP synthase subunit A [Yersinia pestis biovar Microtus str. 91001...
gi|115349714, gi... - gi|218931103|ref|YP_002348978.1| F0F1 ATP synthase subunit A [Yersinia pestis CO92], gi|16124235|ref...
201.0 [0..2] [271..4]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENMTPQD YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT INIDSMFFSV VLGLLFLVLF  60
   61 RSVAKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATSGVPGKFQ TAIELVIGFV NGSVKDMYHG KSKLIAPLAL TIFVWVFLMN LMDLLPIDLL  60
   61 PYIAEHVLGL PALRVVPSAD VNVTLSMALG VFILILFYSI KMKGIGGFTK ELTLQPFNHW 120
  121 AFIPVNLILE GVSLLSKPVS LGLRLFGNMY AGELIFILIA GLLPWWSQWI LNVPWAIFHI 180
  181 LIITLQAFIF MVLTIVYLSM ASEEH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.154902
Match: 1c17M
Description: F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 14.916062574431 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 13.3765277511271 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 11.6266555949852 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 10.5141571800158 bayes_pls_golite062009
cation transmembrane transporter activity 6.7755175807552 bayes_pls_golite062009
ion transmembrane transporter activity 6.66886754588748 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 6.24164033661356 bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism 5.34968915140418 bayes_pls_golite062009
transporter activity 4.44683838532142 bayes_pls_golite062009
substrate-specific transporter activity 4.37473908570954 bayes_pls_golite062009
transmembrane transporter activity 4.36056336888635 bayes_pls_golite062009
cation-transporting ATPase activity 3.33662712450334 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 1.11865103919948 bayes_pls_golite062009
primary active transmembrane transporter activity 0.517601509369888 bayes_pls_golite062009
active transmembrane transporter activity 0.511311810386796 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.510137962484563 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.476924701765357 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.473395661531507 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.473285892250811 bayes_pls_golite062009
catalytic activity 0.276917867171685 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.242742762516199 bayes_pls_golite062009
pyrophosphatase activity 0.201337507209354 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.191294406773539 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.188721983770471 bayes_pls_golite062009
ATPase activity, coupled 0.110491424400621 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle