YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89110923, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89110923, gi|....

Description	E-value	Query Range	Subject Range
RL9_PHOLL - 50S ribosomal protein L9 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565... RL9_PHOLL - 50S ribosomal protein L9 OS=Photorhabdus luminescens subsp. laumondii GN=rplI PE=3 SV=1	182.0	[0..1]	[149..1]
RL9_VIBVY - 50S ribosomal protein L9 OS=Vibrio vulnificus (strain YJ016) GN=rplI PE=3 SV=1 RL9_VIBVU - 50S ribosomal protein L9 OS=Vibrio vulnificus (strain CMCP6) GN=rplI PE=3 SV=1 RL9_VIBVU - 50S ribosomal protein L9 OS=Vibrio vulnificus GN=rplI PE=3 SV=1	181.0	[0..1]	[149..1]
RL9_HAES1 - 50S ribosomal protein L9 OS=Haemophilus somnus (strain 129Pt) GN=rplI PE=3 SV=1 RL9_HISS2 - 50S ribosomal protein L9 OS=Histophilus somni (strain 2336) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
RL9_SHIDS - 50S ribosomal protein L9 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
RL9_ACTSZ - 50S ribosomal protein L9 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
gi\|77977619, gi\|... - gi\|77977619\|ref\|ZP_00833063.1\| COG0359: Ribosomal protein L9 [Yersinia intermedia ATCC 29909], gi\|23...	179.0	[0..1]	[149..1]
gi\|125617292, gi... - gi\|254851680\|ref\|ZP_05241030.1\| ribosomal protein L9 [Vibrio cholerae MO10], gi\|254847385\|gb\|EET2579... RL9_VIBCH - 50S ribosomal protein L9 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN... gi\|121590962, gi... - gi\|121590962\|ref\|ZP_01678282.1\| ribosomal protein L9 [Vibrio cholerae 2740-80], gi\|121547188\|gb\|EAX5... gi\|153216661, gi... - gi\|153216661\|ref\|ZP_01950568.1\| ribosomal protein L9 [Vibrio cholerae 1587], gi\|124114172\|gb\|EAY3299... gi\|153225591, gi... - gi\|153225591\|ref\|ZP_01954795.1\| ribosomal protein L9 [Vibrio cholerae MAK 757], gi\|124117280\|gb\|EAY3... gi\|126509200, gi... - gi\|153820249\|ref\|ZP_01972916.1\| ribosomal protein L9 [Vibrio cholerae NCTC 8457], gi\|126509200\|gb\|EA... gi\|229508610, gi... - gi\|229508610\|ref\|ZP_04398106.1\| LSU ribosomal protein L9p [Vibrio cholerae B33], gi\|229354378\|gb\|EEO... gi\|150423622, gi... - gi\|254286207\|ref\|ZP_04961166.1\| ribosomal protein L9 [Vibrio cholerae AM-19226], gi\|197752197\|ref\|YP... RL9_VIBCH - 50S ribosomal protein L9 OS=Vibrio cholerae GN=rplI PE=3 SV=1 gi\|153830454, gi... - gi\|153830454\|ref\|ZP_01983121.1\| ribosomal protein L9 [Vibrio cholerae 623-39], gi\|148874056\|gb\|EDL72... gi\|149737884, gi... - gi\|153827634\|ref\|ZP_01980301.1\| ribosomal protein L9 [Vibrio cholerae MZO-2], gi\|149737884\|gb\|EDM527... RL9_VIBCM - 50S ribosomal protein L9 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplI PE=3 SV=1 gi\|229358010, gi... - gi\|229504952\|ref\|ZP_04394463.1\| LSU ribosomal protein L9p [Vibrio cholerae BX 330286], gi\|229358010\|... gi\|229350393, gi... - gi\|229512611\|ref\|ZP_04402081.1\| LSU ribosomal protein L9p [Vibrio cholerae TMA 21], gi\|229350393\|gb\|... gi\|229516022, gi... - gi\|229516022\|ref\|ZP_04405473.1\| LSU ribosomal protein L9p [Vibrio cholerae RC9], gi\|229346925\|gb\|EEO... gi\|229343052, gi... - gi\|229519924\|ref\|ZP_04409355.1\| LSU ribosomal protein L9p [Vibrio cholerae TM 11079-80], gi\|22934305... gi\|229335556, gi... - gi\|229526944\|ref\|ZP_04416341.1\| LSU ribosomal protein L9p [Vibrio cholerae 12129(1)], gi\|229335556\|g... gi\|229606350, gi... - gi\|229606350\|ref\|YP_002876998.1\| LSU ribosomal protein L9p [Vibrio cholerae MJ-1236], gi\|229369005\|g... RL9_VIBC3 - 50S ribosomal protein L9 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O... gi\|121730194, gi... - gi\|75814181\|ref\|ZP_00744808.1\| COG0359: Ribosomal protein L9 [Vibrio cholerae V52], gi\|121730194\|ref...	179.0	[0..1]	[149..1]
gi\|238783556, gi... - gi\|77958752\|ref\|ZP_00822780.1\| COG0359: Ribosomal protein L9 [Yersinia bercovieri ATCC 43970], gi\|23...	179.0	[0..1]	[149..1]
gi\|213981554 - gi\|213981554\|ref\|ZP_03408813.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|214003332 - gi\|214003332\|ref\|ZP_03414067.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALPC - 50S ribosomal protein L9 OS=Salmonella paratyphi C (strain RKS4594) GN=rplI PE=3 SV=1 RL9_SALTI - 50S ribosomal protein L9 OS=Salmonella typhi GN=rplI PE=3 SV=1 gi\|16763211 - gi\|16763211\|ref\|NP_458828.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serovar T... gi\|29144690, gi\|... - gi\|29144690\|ref\|NP_808032.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serovar T... gi\|238910551 - gi\|238910551\|ref\|ZP_04654388.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis (strain SC-B67) GN=rplI PE=3 SV=1 RL9_SALTI - 50S ribosomal protein L9 OS=Salmonella typhi GN=rplI PE=3 SV=1 RL9_SALPA - 50S ribosomal protein L9 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplI PE=3 SV=1 RL9_SALAR - 50S ribosomal protein L9 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplI ... gi\|213428640 - gi\|213428640\|ref\|ZP_03361390.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213582063 - gi\|213582063\|ref\|ZP_03363889.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis GN=rplI PE=3 SV=1 gi\|213649002 - gi\|213649002\|ref\|ZP_03379055.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... RL9_SALPA - 50S ribosomal protein L9 OS=Salmonella paratyphi A GN=rplI PE=3 SV=1 gi\|213864942 - gi\|213864942\|ref\|ZP_03387061.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|204323759, gi... - gi\|204927094\|ref\|ZP_03218296.1\| ribosomal protein L9 [Salmonella enterica subsp. enterica serovar Ja... gi\|213028577 - gi\|213028577\|ref\|ZP_03343024.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213161634 - gi\|213161634\|ref\|ZP_03347344.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|213419167 - gi\|213419167\|ref\|ZP_03352233.1\| 50S ribosomal protein L9 [Salmonella enterica subsp. enterica serova... gi\|194472793, gi... - gi\|194472793\|ref\|ZP_03078777.1\| ribosomal protein L9 [Salmonella enterica subsp. enterica serovar Ke... RL9_SALCH - 50S ribosomal protein L9 OS=Salmonella choleraesuis GN=rplI PE=3 SV=1 RL9_SALSV - 50S ribosomal protein L9 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplI PE=3 SV=1 RL9_SALA4 - 50S ribosomal protein L9 OS=Salmonella agona (strain SL483) GN=rplI PE=3 SV=1 RL9_SALPK - 50S ribosomal protein L9 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]
RL9_AROAE - 50S ribosomal protein L9 OS=Aromatoleum aromaticum (strain EbN1) GN=rplI PE=3 SV=1	179.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVILLDKVA NLGSLGDQVN VKAGYARNFL VPQGKAVPAT KKNIEFFEAR RAELEAKLAE  60
   61 VLAAANARAE KINALETVTI ASKAGDEGKL FGSIGTRDIA DAVTAAGVEV AKSEVRLPNG 120
  121 VLRTTGEHEV SFQVHSEVFA KVIVNVVAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1p85F
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.6660890573497	bayes_pls_golite062009
structural molecule activity	8.10075613300028	bayes_pls_golite062009
catalytic activity	0.295853503406924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: