YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194517638, gi...
Organism:	Burkholderia pseudomallei S13
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194517638, gi....

Description	E-value	Query Range	Subject Range
gi\|167815052 - gi\|167815052\|ref\|ZP_02446732.1\| pyrophosphatase, MutT/nudix family protein [Burkholderia pseudomalle... gi\|167893562 - gi\|167893562\|ref\|ZP_02480964.1\| pyrophosphatase, MutT/nudix family protein [Burkholderia pseudomalle... gi\|53718862, gi\|... - gi\|53718862\|ref\|YP_107848.1\| hypothetical protein BPSL1226 [Burkholderia pseudomallei K96243], gi\|52... gi\|217419578, gi... - gi\|217419578\|ref\|ZP_03451084.1\| hydrolase, NUDIX family [Burkholderia pseudomallei 576], gi\|21739688... gi\|76810831, gi\|... - gi\|76810831\|ref\|YP_332860.1\| MutT/NUDIX NTP pyrophosphatase [Burkholderia pseudomallei 1710b], gi\|76... gi\|254190535, gi... - gi\|67754577\|ref\|ZP_00493483.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|161374746, gi... - gi\|90291949\|ref\|ZP_01211568.1\| hypothetical protein Bpse17_02003418 [Burkholderia pseudomallei 1710a...	178.0	[0..1]	[196..1]

Back

Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLPNHDAT LTETCIESES VYDGAFLKVK RDTVRLPDGK HATREYVTHP GAVMVIPLFD  60
   61 DGRVLMESQY RYPIGKVMAE FPAGKLDPNE GALACAVREL REETGYTARE YVFLTRIHPI 120
  121 ISYSTEFIDI YLARGLTAGE RKLDDGEFLE TFTATLPDLL EWVRTGRISD VKTIIGTMWL 180
  181 EKAVSGAWPL GDVIRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1mk1A
Description:	Structure of the MT-ADPRase in complex with ADPR, a Nudix enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.97790691270817	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.544115189438	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.54377405132398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: