YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|82531608, gi\|...
Organism:	Burkholderia pseudomallei 1106a
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|82531608, gi|....

Description	E-value	Query Range	Subject Range
gi\|118652866, gi... - gi\|170733460\|ref\|YP_001765407.1\| cell division protein FtsB [Burkholderia cenocepacia MC0-3], gi\|169... gi\|116648216, gi... - gi\|67666377\|ref\|ZP_00463626.1\| Septum formation initiator [Burkholderia cenocepacia HI2424], gi\|6710... gi\|107028714, gi... - gi\|67657012\|ref\|ZP_00454392.1\| Septum formation initiator [Burkholderia cenocepacia AU 1054], gi\|670...	188.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVTVVLIA LLIVIQYPLW WGHGGWLRVH ELRQQLNDQL QKNADAKLRN ERIAGEVQDL  60
   61 QGGTSAIEER ARYEMGMVKD GEVFVQFVSP NSPAPAAQGN ASSATSTRGD VSGAPMRVVP 120
  121 NPVSRAKPER RHGGDKAHKP AHG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.091515
Match:	PF04977.6
Description:	No description for PF04977.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits