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View Structure Prediction Details

Protein: RS10_RHOP2
Organism: Rhodopseudomonas palustris HaA2
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS10_RHOP2.

Description E-value Query
Range
Subject
Range
gi|83312230, gi|... - gi|83312230|ref|YP_422494.1| Ribosomal protein S10 [Magnetospirillum magneticum AMB-1], gi|82947071|...
157.0 [0..1] [102..24]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQNIRIRL KAFDHRILDT STREIVNTAK RTGAQVRGPI PLPTRIEKFT VNRSPHVDKK  60
   61 SREQFEMRTH KRLLDIVDPT PQTVDALMKL DLAAGVDVEI KL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.69897
Match: 1p6gJ
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.82905885280588 bayes_pls_golite062009
structural molecule activity 9.25405593567362 bayes_pls_golite062009
binding 0.795193544824207 bayes_pls_golite062009
RNA binding 0.60427462690745 bayes_pls_golite062009
nucleic acid binding 0.513619902565835 bayes_pls_golite062009
protein binding 0.180450584965049 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle