YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148546233, gi...
Organism:	Pseudomonas putida F1
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148546233, gi....

Description	E-value	Query Range	Subject Range
gi\|71909757, gi\|... - gi\|71909757\|ref\|YP_287344.1\| SSU ribosomal protein S30P / sigma 54 modulation protein [Dechloromonas...	123.0	[0..1]	[98..1]
gi\|77955193, gi\|... - gi\|77955193\|ref\|ZP_00819568.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Marinobacter aqu...	122.0	[0..1]	[102..1]
gi\|28210085, gi\|... - gi\|28210085\|ref\|NP_781029.1\| SSU ribosomal protein S30P [Clostridium tetani E88], gi\|28202521\|gb\|AAO...	121.0	[0..1]	[102..1]
HPF_AZOVI - Ribosome hibernation promoting factor OS=Azotobacter vinelandii GN=hpf PE=3 SV=1	121.0	[0..1]	[100..1]
gi\|78485316, gi\|... - gi\|78485316\|ref\|YP_391241.1\| sigma 54 modulation protein/ribosomal protein S30EA [Thiomicrospira cru...	120.0	[0..1]	[101..1]
gi\|42784341, gi\|... - gi\|42784341\|ref\|NP_981588.1\| ribosomal subunit interface protein [Bacillus cereus ATCC 10987], gi\|42... gi\|228584165, gi... - gi\|229199305\|ref\|ZP_04325972.1\| Ribosome-associated factor Y [Bacillus cereus m1293], gi\|228584165\|g... gi\|228823307, gi... - gi\|228936475\|ref\|ZP_04099273.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar andalou... gi\|206976850, gi... - gi\|206976850\|ref\|ZP_03237753.1\| ribosomal subunit interface protein [Bacillus cereus H3081.97], gi\|2... gi\|49481144, gi\|... - gi\|49481144\|ref\|YP_039178.1\| ribosomal subunit interface protein [Bacillus thuringiensis serovar kon...	120.0	[0..1]	[100..1]
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	120.0	[0..1]	[100..1]
gi\|196039551, gi... - gi\|196039551\|ref\|ZP_03106856.1\| ribosomal subunit interface protein [Bacillus cereus NVH0597-99], gi... gi\|254755618 - gi\|254755618\|ref\|ZP_05207651.1\| ribosomal subunit interface protein [Bacillus anthracis str. Vollum] gi\|196045660, gi... - gi\|196045660\|ref\|ZP_03112890.1\| ribosomal subunit interface protein [Bacillus cereus 03BB108], gi\|19... gi\|254744320 - gi\|254744320\|ref\|ZP_05202000.1\| ribosomal subunit interface protein [Bacillus anthracis str. Kruger ... gi\|49188025, gi\|... - gi\|49188025\|ref\|YP_031278.1\| ribosomal subunit interface protein [Bacillus anthracis str. Sterne], g... gi\|218538065, gi... - gi\|218906364\|ref\|YP_002454198.1\| ribosomal subunit interface protein [Bacillus cereus AH820], gi\|218... gi\|254735592 - gi\|254735592\|ref\|ZP_05193299.1\| ribosomal subunit interface protein [Bacillus anthracis str. Western... gi\|52140376, gi\|... - gi\|52140376\|ref\|YP_086454.1\| ribosomal subunit interface protein [Bacillus cereus E33L], gi\|51973845... gi\|254686387 - gi\|254686387\|ref\|ZP_05150246.1\| ribosomal subunit interface protein [Bacillus anthracis str. CNEVA-9... gi\|30259891, gi\|... - gi\|30265214\|ref\|NP_847591.1\| ribosomal subunit interface protein [Bacillus anthracis str. Ames], gi\|... gi\|229600659, gi... - gi\|229600659\|ref\|YP_002869408.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0248]... gi\|47530736, gi\|... - gi\|47530736\|ref\|YP_022085.1\| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames Ance... gi\|229187399, gi... - gi\|229187399\|ref\|ZP_04314542.1\| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1], gi\|22859610... gi\|228607592, gi... - gi\|229175859\|ref\|ZP_04303357.1\| Ribosome-associated factor Y [Bacillus cereus MM3], gi\|228607592\|gb\|... gi\|21397652, gi\|... - gi\|65317161\|ref\|ZP_00390120.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Bacillus anthracis s... gi\|229124695, gi... - gi\|229124695\|ref\|ZP_04253876.1\| Ribosome-associated factor Y [Bacillus cereus 95/8201], gi\|228658790... gi\|164714285, gi... - gi\|165869962\|ref\|ZP_02214619.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0488],... gi\|229094283, gi... - gi\|229094283\|ref\|ZP_04225359.1\| Ribosome-associated factor Y [Bacillus cereus Rock3-42], gi\|22868913... gi\|167635298, gi... - gi\|167635298\|ref\|ZP_02393613.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0442],... gi\|228981891, gi... - gi\|228981891\|ref\|ZP_04142186.1\| Ribosome-associated factor Y [Bacillus thuringiensis Bt407], gi\|2287... gi\|167640491, gi... - gi\|167640491\|ref\|ZP_02398754.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0193],... gi\|228975253, gi... - gi\|228975253\|ref\|ZP_04135811.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar thuring... gi\|170687990, gi... - gi\|170687990\|ref\|ZP_02879203.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0465],... gi\|228948907, gi... - gi\|228948907\|ref\|ZP_04111180.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar monterr... gi\|170707806, gi... - gi\|170707806\|ref\|ZP_02898257.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0389],... gi\|228942324, gi... - gi\|228942324\|ref\|ZP_04104863.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar berline... gi\|172081770, gi... - gi\|177652995\|ref\|ZP_02935322.1\| ribosomal subunit interface protein [Bacillus anthracis str. A0174],... gi\|228917792, gi... - gi\|228917792\|ref\|ZP_04081331.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar pulsien... gi\|190567823, gi... - gi\|190567823\|ref\|ZP_03020735.1\| ribosomal subunit interface protein [Bacillus anthracis Tsiankovskii... gi\|227004908, gi... - gi\|227817948\|ref\|YP_002817957.1\| ribosomal subunit interface protein [Bacillus anthracis str. CDC 68... gi\|195994277, gi... - gi\|196032848\|ref\|ZP_03100261.1\| ribosomal subunit interface protein [Bacillus cereus W], gi\|19599427... gi\|225790392, gi... - gi\|225867152\|ref\|YP_002752530.1\| ribosomal subunit interface protein [Bacillus cereus 03BB102], gi\|2... gi\|118419452, gi... - gi\|118480227\|ref\|YP_897378.1\| sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus thu... gi\|254757073 - gi\|254757073\|ref\|ZP_05209101.1\| ribosomal subunit interface protein [Bacillus anthracis str. Austral...	120.0	[0..1]	[100..1]
gi\|7465518, gi\|45734 - pir\|\|T01754 hypothetical protein 102 - Pseudomonas putida, gi\|45734\|emb\|CAA34495.1\| ORF102 [Pseudomo...	120.0	[0..1]	[102..1]
gi\|54310344, gi\|... - gi\|54310344\|ref\|YP_131364.1\| putative sigma-54 modulation protein [Photobacterium profundum SS9], gi...	119.0	[0..1]	[95..3]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVNISGQHV EVTQPLRDYV LEKLARVESH FDKITNVQVI MKVEKLQQKV EATLQIPGGE  60
   61 VVANAEHEDM YAAIDALADK LDRQLKKHKE KQQSLLQGAA AR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: