YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62462808, gi\|...
Organism:	Lactococcus lactis subsp. cremoris SK11
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62462808, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	243.0	[0..2]	[231..105]
gi\|3236110 - gi\|3236110\|emb\|CAA04532.1\| arcA [Lactococcus lactis]	241.0	[0..1]	[233..1]
gi\|6687469 - gi\|6687469\|emb\|CAB64972.1\| VicR protein [Enterococcus faecalis]	241.0	[0..2]	[232..51]
gi\|29375768, gi\|... - gi\|29375768\|ref\|NP_814922.1\| DNA-binding response regulator VicR [Enterococcus faecalis V583], gi\|29... gi\|229308653, gi... - gi\|229546129\|ref\|ZP_04434854.1\| DNA-binding response regulator protein [Enterococcus faecalis TX1332... gi\|227177886, gi... - gi\|227552977\|ref\|ZP_03983026.1\| DNA-binding response regulator [Enterococcus faecalis HH22], gi\|2271... gi\|227074125, gi... - gi\|227518447\|ref\|ZP_03948496.1\| DNA-binding response regulator [Enterococcus faecalis TX0104], gi\|22... gi\|238857001, gi... - gi\|238857001\|ref\|ZP_04647257.1\| transcriptional regulatory protein [Enterococcus faecalis TUSoD Ef11... gi\|229550318, gi... - gi\|229550318\|ref\|ZP_04439043.1\| DNA-binding response regulator [Enterococcus faecalis ATCC 29200], g...	241.0	[0..1]	[232..1]
gi\|68194788, gi\|... - gi\|69247564\|ref\|ZP_00604398.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter... gi\|227552548, gi... - gi\|227552548\|ref\|ZP_03982597.1\| VicR family response regulator [Enterococcus faecium TX1330], gi\|227...	240.0	[0..1]	[232..1]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	237.0	[0..3]	[231..4]
gi\|89091041, gi\|... - gi\|89091041\|ref\|ZP_01164069.1\| Response regulator receiver [Lactobacillus reuteri JCM 1112], gi\|8907... gi\|77745293 - gi\|77745293\|gb\|ABB02547.1\| response regulator [Lactobacillus reuteri]	237.0	[0..2]	[232..3]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	237.0	[0..2]	[230..5]
gi\|91803424, gi\|... - gi\|92089806\|ref\|ZP_01274734.1\| Response regulator receiver:Transcriptional regulatory protein-like [...	236.0	[0..2]	[232..3]
gi\|28269835, gi\|... - gi\|28377004\|ref\|NP_783896.1\| response regulator [Lactobacillus plantarum WCFS1], gi\|28269835\|emb\|CAD...	236.0	[0..1]	[232..1]

Back

Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILVVDDE KPISDIVKFN LTKEGFEVFT AFDGEEALEA FKEVQPDLIL LDLMLPKLDG  60
   61 LDVAREIRKT SDTPIIMVSA KDSEFDKVIG LELGADDYVT KPFSNRELLA RIKANLRRIN 120
  121 VAPAESTDNV KKELIIGNLR INPAHYAAYK NDKQLDLTHR EFELLYYLAQ HLGEVITREN 180
  181 LLETVWGYDY FGDVRTVDVT VRRLREKVED TPSRPQYVST RRGVGYYMSN PHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits