YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187733173, gi...
Organism:	Shigella boydii CDC 3083-94
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187733173, gi....

Description	E-value	Query Range	Subject Range
gi\|76794909, gi\|... - gi\|76794909\|ref\|ZP_00777362.1\| BolA-like protein [Pseudoalteromonas atlantica T6c], gi\|76589816\|gb\|E...	157.0	[0..1]	[104..1]
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	157.0	[0..1]	[105..12]
gi\|56414398, gi\|... - gi\|56414398\|ref\|YP_151473.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|161504377, gi... - gi\|161504377\|ref\|YP_001571489.1\| transcriptional regulator BolA [Salmonella enterica subsp. arizonae... gi\|238911422 - gi\|238911422\|ref\|ZP_04655259.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|16501717, gi\|... - gi\|25300378\|pir\|\|AI0557 BolA protein [imported] - Salmonella enterica subsp. enterica serovar Typhi ... gi\|16418953, gi\|... - gi\|16763827\|ref\|NP_459442.1\| transcriptional regulator BolA [Salmonella typhimurium LT2], gi\|1641895... gi\|197212471, gi... - gi\|197248768\|ref\|YP_002145427.1\| protein BolA [Salmonella enterica subsp. enterica serovar Agona str... gi\|197244177, gi... - gi\|197265922\|ref\|ZP_03165996.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197363318, gi... - gi\|197363318\|ref\|YP_002142955.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|197937434, gi... - gi\|198242918\|ref\|YP_002214400.1\| protein BolA [Salmonella enterica subsp. enterica serovar Dublin st... gi\|194401515, gi... - gi\|194442852\|ref\|YP_002039689.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport s... gi\|194447317, gi... - gi\|194447317\|ref\|YP_002044481.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|194457196, gi... - gi\|194470832\|ref\|ZP_03076816.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194734965, gi... - gi\|194734965\|ref\|YP_002113477.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|168240271, gi... - gi\|205340222\|gb\|EDZ26986.1\| protein BolA [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|205349843, gi... - gi\|205349843\|gb\|EDZ36474.1\| protein BolA [Salmonella enterica subsp. enterica serovar Hadar str. RI_... lcl\|NC_016856.1_... - [gene=bolA] [protein=transcriptional regulator BolA] [protein_id=YP_005236141.1] [location=501694..5... gi\|195631964, gi... - gi\|195631964\|gb\|EDX50484.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205343965, gi... - gi\|205343965\|gb\|EDZ30729.1\| protein BolA [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|161364726, gi... - gi\|161615362\|ref\|YP_001589327.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|167551740, gi... - gi\|205323408\|gb\|EDZ11247.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205334069, gi... - gi\|205334069\|gb\|EDZ20833.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168237559, gi... - gi\|197289573\|gb\|EDY28936.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|214001926 - gi\|214001926\|ref\|ZP_03412661.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213616066 - gi\|213616066\|ref\|ZP_03371892.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213646007 - gi\|213646007\|ref\|ZP_03376060.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213853066 - gi\|213853066\|ref\|ZP_03382598.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213974200 - gi\|213974200\|ref\|ZP_03401459.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213161816 - gi\|213161816\|ref\|ZP_03347526.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213419492 - gi\|213419492\|ref\|ZP_03352558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213425860 - gi\|213425860\|ref\|ZP_03358610.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213580886 - gi\|213580886\|ref\|ZP_03362712.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|200390073, gi... - gi\|200390073\|ref\|ZP_03216684.1\| protein BolA [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205271538, gi... - gi\|205351757\|ref\|YP_002225558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|206707729, gi... - gi\|207855926\|ref\|YP_002242577.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|213023413 - gi\|213023413\|ref\|ZP_03337860.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|29142802, gi\|... - gi\|29142802\|ref\|NP_806144.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|16759426 - gi\|16759426\|ref\|NP_455043.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser...	152.0	[0..1]	[105..1]
gi\|84779167, gi\|... - gi\|85058647\|ref\|YP_454349.1\| transcriptional regulator BolA [Sodalis glossinidius str. 'morsitans'],...	152.0	[0..1]	[105..1]
gi\|254849424, gi... - gi\|75830031\|ref\|ZP_00759317.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... BOLA_VIBCH - DNA-binding transcriptional regulator BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... gi\|146316430, gi... - gi\|75827583\|ref\|ZP_00757018.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|121726775, gi... - gi\|75815769\|ref\|ZP_00746262.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|227010308, gi... - gi\|227082420\|ref\|YP_002810971.1\| bolA protein [Vibrio cholerae M66-2], gi\|227010308\|gb\|ACP06520.1\| b... gi\|121549568, gi... - gi\|121586156\|ref\|ZP_01675947.1\| bolA protein [Vibrio cholerae 2740-80], gi\|121549568\|gb\|EAX59592.1\| ... gi\|124119746, gi... - gi\|153221399\|ref\|ZP_01952377.1\| bolA protein [Vibrio cholerae MAK 757], gi\|124119746\|gb\|EAY38489.1\| ... BOLA_VIBCH - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1 gi\|153817860, gi... - gi\|153817860\|ref\|ZP_01970527.1\| bolA protein [Vibrio cholerae NCTC 8457], gi\|126511568\|gb\|EAZ74162.1... gi\|126520974, gi... - gi\|153821481\|ref\|ZP_01974148.1\| bolA protein [Vibrio cholerae B33], gi\|126520974\|gb\|EAZ78197.1\| bolA...	151.0	[0..2]	[105..1]
gi\|86145674, gi\|... - gi\|86145674\|ref\|ZP_01064004.1\| cell division protein BolA [Vibrio sp. MED222], gi\|85836645\|gb\|EAQ547... gi\|218708713, gi... - gi\|218708713\|ref\|YP_002416334.1\| Cell division protein BolA [Vibrio splendidus LGP32], gi\|218321732\|...	150.0	[0..2]	[103..1]
gi\|124113689, gi... - gi\|153217278\|ref\|ZP_01951039.1\| bolA protein [Vibrio cholerae 1587], gi\|124113689\|gb\|EAY32509.1\| bol... tr\|A0A085SCM5\|A0... - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1, BolA protein OS=Vibrio cholerae RC385 GN=VCRC385_... gi\|116220970 - gi\|116220970\|ref\|ZP_01486388.1\| hypothetical protein VchoV5_02001010 [Vibrio cholerae V51] gi\|75822844, gi\|... - gi\|75822844\|ref\|ZP_00752402.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|254286034, gi... - gi\|254286034\|ref\|ZP_04960995.1\| bolA protein [Vibrio cholerae AM-19226], gi\|197752519\|ref\|YP_0021759... gi\|153828245, gi... - gi\|153828245\|ref\|ZP_01980912.1\| bolA protein [Vibrio cholerae 623-39], gi\|148876334\|gb\|EDL74469.1\| b... gi\|153826809, gi... - gi\|153826809\|ref\|ZP_01979476.1\| bolA protein [Vibrio cholerae MZO-2], gi\|149739396\|gb\|EDM53638.1\| bo...	149.0	[0..2]	[105..1]
gi\|37199524, gi\|... - gi\|37680775\|ref\|NP_935384.1\| cell division protein BolA [Vibrio vulnificus YJ016], gi\|37199524\|dbj\|B...	149.0	[0..2]	[101..24]
gi\|84377003, gi\|... - gi\|84388939\|ref\|ZP_00991147.1\| cell division protein BolA [Vibrio splendidus 12B01], gi\|84377003\|gb\|...	149.0	[0..2]	[103..1]
gi\|238729045, gi... - gi\|77979393\|ref\|ZP_00834812.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia interm...	149.0	[0..1]	[105..1]

Back

Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIRERIEEK LRAAFQPVFL EVVDESYRHN VPAGSESHFK VVLVSDRFTG ERFLNRHRMI  60
   61 YSTLAEELST TVHALALHTY TIKEWEGLQD TVFASPPCRG AGSIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2dhmA
Description:	No description for 2dhmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits