YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85675436, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	770 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85675436, gi|....

Description	E-value	Query Range	Subject Range
gi\|192929293, gi... - gi\|75257943\|ref\|ZP_00729417.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E... gi\|75211485 - gi\|75211485\|ref\|ZP_00711575.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	634.0	[0..1]	[770..1]
gi\|157161994, gi... - gi\|75196536\|ref\|ZP_00706606.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	634.0	[0..1]	[770..1]
gi\|83570739, gi\|... - gi\|83570739\|ref\|ZP_00922182.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [S...	634.0	[0..1]	[770..1]
gi\|75237735, gi\|... - gi\|75237735\|ref\|ZP_00721751.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	633.0	[0..1]	[770..1]
gi\|73856522, gi\|... - gi\|74313045\|ref\|YP_311464.1\| penicillin-binding protein 1C [Shigella sonnei Ss046], gi\|73856522\|gb\|A...	632.0	[0..1]	[770..1]
gi\|157080184, gi... - gi\|75187271\|ref\|ZP_00700538.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	632.0	[0..1]	[770..1]
gi\|209763342, gi... - pir\|\|A91052 penicillin binding protein 1C [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|15832639, gi\|... - gi\|15832639\|ref\|NP_311412.1\| penicillin binding protein 1C [Escherichia coli O157:H7], gi\|13362855\|d... gi\|208739165, gi... - gi\|208819042\|ref\|ZP_03259362.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4042]... gi\|209396651, gi... - gi\|209396651\|ref\|YP_002271993.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4115... gi\|217327627, gi... - gi\|217327627\|ref\|ZP_03443710.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. TW14588... gi\|168798894, gi... - gi\|189378582\|gb\|EDU96998.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC508], gi\|... gi\|195936665 - gi\|195936665\|ref\|ZP_03082047.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4024] gi\|208807044, gi... - gi\|208807044\|ref\|ZP_03249381.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4206]... gi\|208735694, gi... - gi\|208814417\|ref\|ZP_03255746.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4045]... gi\|168768615, gi... - gi\|189362338\|gb\|EDU80757.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4486], gi... gi\|168773563, gi... - gi\|187770709\|gb\|EDU34553.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4196], gi... gi\|189003292, gi... - gi\|189003292\|gb\|EDU72278.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4076], gi... gi\|168787869, gi... - gi\|189372316\|gb\|EDU90732.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC869], gi\|... gi\|168748418, gi... - gi\|188017061\|gb\|EDU55183.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4113], gi... gi\|168756295, gi... - gi\|189356632\|gb\|EDU75051.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4401], gi... gi\|168761133, gi... - gi\|189368447\|gb\|EDU86863.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. EC4501], gi... gi\|254794469, gi... - gi\|254794469\|ref\|YP_003079306.1\| fused transglycosylase, transpeptidase [Escherichia coli O157:H7 st... gi\|15832639, gi\|... - gi\|15832639\|ref\|NP_311412.1\| penicillin-binding protein 1C [Escherichia coli O157:H7 str. Sakai], gi...	632.0	[0..1]	[770..1]
gi\|190902275, gi... - gi\|75229149\|ref\|ZP_00715721.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	631.0	[0..1]	[770..1]
gi\|187732591, gi... - gi\|75178125\|ref\|ZP_00698184.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [S...	631.0	[0..1]	[770..1]
gi\|91211846, gi\|... - gi\|91211846\|ref\|YP_541832.1\| penicillin-binding protein 1C [Escherichia coli UTI89], gi\|91073420\|gb\|... gi\|117624748, gi... - gi\|117624748\|ref\|YP_853661.1\| penicillin-binding protein 1C [Escherichia coli APEC O1], gi\|115513872... gi\|218366214, gi... - gi\|218559445\|ref\|YP_002392358.1\| penicillin-binding protein 1C [Escherichia coli S88], gi\|218366214\|... gi\|226901395, gi... - gi\|237705029\|ref\|ZP_04535510.1\| penicillin-binding protein 1C [Escherichia sp. 3_2_53FAA], gi\|226901...	631.0	[0..1]	[770..1]

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Predicted Domain #1

Region A:
Residues: [1-589]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLLTKRGC WITLAAAPFL LFLAAWGADK LWPLPLHEVN PARVVVAQDG TPLWRFADAD  60
   61 GIWRYPVTIE DVSPRYLEAL INYEDRWFWK HPGVNPFSVA RAAWQDLTSG RVISGGSTLT 120
  121 MQVARLLDPH PKTFGGKIRQ LWRALQLEWH LSKREILTLY LNRAPFGGTL QGIGAASWAY 180
  181 LGKSPANLSY SEAAMLAVLP QAPSRLRPDR WPERAEAARN KVLERMAVQG VWSREQVKES 240
  241 REEPIWLAPR QMPQLAPLFS RMMLGKSKSD KITTTLDAGL QRRLEELAQN WKGRLPPRSS 300
  301 LAMIVVDHTD MRVRGWVGSV DLNDDSRFGH VDMVNSIRSP GSVLKPFVYG LALDEGLIHP 360
  361 ASLLQDVPRR TGDYRPGNFD SGFHGPISMS EALVRSLNLP AVQVLEAYGP KRFAAKLRNV 420
  421 GLPLYLPNGA APNLSLILGG AGAKLEDMAA AYTAFARHGK AGKLRLQPDD PLLERPLMSS 480
  481 GAAWIIRRIM ADEAQPLPDS ALPRVAPLAW KTGTSYGYRD AWAIGVNARY VIGIWTGRPD 540
  541 GTPVVGQFGF ASAVPLLNQV NNILLSRSAN LPEDPRPNSV TRGVICWPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.09691
Match:	2oluA
Description:	No description for 2oluA was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	3.77507319667289	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.4039757547751	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
drug binding	2.27792716125407	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
exopeptidase activity	1.44522375970439	bayes_pls_golite062009
binding	0.967786931456022	bayes_pls_golite062009
peptidase activity	0.88898857866944	bayes_pls_golite062009
hydrolase activity	0.852674113261898	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.710917280650211	bayes_pls_golite062009
chitinase activity	0.42465610730229	bayes_pls_golite062009
protein binding	0.274057433888583	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [590-770]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQSLPEGDGN CRRRLATWLL DGSQPPTLLL PEQEGINGIR FPIWLDENGK RVAADCPQAR  60
   61 QEMINVWPLP LEPWLPASER RAVRLPPAST SCPPYGHDAQ LPLQLTGVRD GAIIKRLPGA 120
  121 AEATLPLQSS GGAGERWWFL NGEPLTERGR NVTLHLTDKG DYQLLVMDDV GQIATVKFVM 180
  181 Q

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.48
Match:	1jbjA
Description:	CD3 gamma chain ectodomain fragment; CD3 epsilon chain ectodomain fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.27173620923431	bayes_pls_golite062009
protein binding	1.31579477754421	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: