YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83725780, gi\|...
Organism:	Ralstonia solanacearum UW551
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83725780, gi|....

Description	E-value	Query Range	Subject Range
gi\|30179962, gi\|... - gi\|30248077\|ref\|NP_840147.1\| flagellar motor protein MotA [Nitrosomonas europaea ATCC 19718], gi\|301...	250.0	[0..1]	[284..1]
gi\|37525778, gi\|... - gi\|37525778\|ref\|NP_929122.1\| flagellar motor protein MotA [Photorhabdus luminescens subsp. laumondii...	247.0	[0..1]	[284..1]
gi\|74056756, gi\|... - gi\|74317261\|ref\|YP_315001.1\| flagellar motor protein MotA [Thiobacillus denitrificans ATCC 25259], g...	246.0	[0..1]	[285..1]
gi\|114307231, gi... - gi\|71550451\|ref\|ZP_00670566.1\| probable chemotaxis (motility protein A) transmembrane [Nitrosomonas ...	243.0	[0..1]	[284..1]
gi\|91689615, gi\|... - gi\|91785661\|ref\|YP_560867.1\| flagellar motor protein MotA [Burkholderia xenovorans LB400], gi\|916896...	242.0	[0..1]	[284..1]
gi\|238785461, gi... - gi\|77957115\|ref\|ZP_00821180.1\| COG1291: Flagellar motor component [Yersinia bercovieri ATCC 43970], ...	242.0	[0..1]	[284..1]
gi\|62128133, gi\|... - gi\|62180500\|ref\|YP_216917.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|56127415, gi\|... - gi\|56413158\|ref\|YP_150233.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|161613517, gi... - gi\|161613517\|ref\|YP_001587482.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|167552437, gi... - gi\|205322878\|gb\|EDZ10717.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sai... gi\|205327857, gi... - gi\|205327857\|gb\|EDZ14621.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar 4,[... gi\|205331990, gi... - gi\|205331990\|gb\|EDZ18754.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Ken... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium GN=motA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=motA] [protein=flagellar motor protein MotA] [protein_id=YP_005237891.1] [location=complement(... gi\|200389572, gi... - gi\|200389572\|ref\|ZP_03216183.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|204931070, gi... - gi\|204931070\|ref\|ZP_03221896.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|224468100, gi... - gi\|224583573\|ref\|YP_002637371.1\| flagellar motor protein [Salmonella enterica subsp. enterica serova... MOTA_SALTY - Chemotaxis protein motA OS=Salmonella typhimurium GN=motA PE=3 SV=1 gi\|194735541, gi... - gi\|194735541\|ref\|YP_002114960.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197248635, gi... - gi\|197248635\|ref\|YP_002146097.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197244243, gi... - gi\|197265988\|ref\|ZP_03166062.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197937986, gi... - gi\|198243470\|ref\|YP_002215159.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|205342756, gi... - gi\|205342756\|gb\|EDZ29520.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Wel... gi\|194444912, gi... - gi\|194444912\|ref\|YP_002041190.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|194408818, gi... - gi\|194450514\|ref\|YP_002045978.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|194468783, gi... - gi\|194468783\|ref\|ZP_03074767.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197288649, gi... - gi\|197288649\|gb\|EDY28024.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sch... gi\|238912500 - gi\|238912500\|ref\|ZP_04656337.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|168241556, gi... - gi\|205339404\|gb\|EDZ26168.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Hei... gi\|205350824, gi... - gi\|205350824\|gb\|EDZ37455.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Had... gi\|195634498, gi... - gi\|195634498\|gb\|EDX52850.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar New... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=motA PE=3 SV=1	242.0	[0..1]	[283..1]
gi\|238795649, gi... - gi\|77960502\|ref\|ZP_00824370.1\| COG1291: Flagellar motor component [Yersinia mollaretii ATCC 43969], ...	242.0	[0..1]	[284..1]
gi\|77976912, gi\|... - gi\|77976912\|ref\|ZP_00832378.1\| COG1291: Flagellar motor component [Yersinia intermedia ATCC 29909], ...	241.0	[0..1]	[284..1]
gi\|213855851 - gi\|213855851\|ref\|ZP_03384091.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|29141436, gi\|... - gi\|29141436\|ref\|NP_804778.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|16760872 - gi\|16760872\|ref\|NP_456489.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|25298881, gi\|... - gi\|25298881\|pir\|\|AG0746 motility protein A [imported] - Salmonella enterica subsp. enterica serovar ... gi\|213647164 - gi\|213647164\|ref\|ZP_03377217.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|213622330 - gi\|213622330\|ref\|ZP_03375113.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|213163276 - gi\|213163276\|ref\|ZP_03348986.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se...	240.0	[0..1]	[283..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAIGYIVI LASVFGGYML AGGHLGPLFQ PTELLIIFGA GVGAFVVGND KKAINATVKS  60
   61 LPGLFKGSKY TKALYMEVMA LLYVMLSKIR REGMMSIEAD IESPHESALF SNYPAIQADH 120
  121 HAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFICDYLRLM VGGNLNPFQI EALMDQEIDT HHHEAEQPAR IITKVGDAMP AFGIVAAVMG  60
   61 VVHTMGSVGL PPAELGKLIA SALVGTFLGI LLAYGFIGPL GSLLEQRAEE STKLFQCIKV 120
  121 TLLASMNGYA PAIAVEFGRK VLFSTERPSF AELEDHVRGA KTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits