YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62161285, gi\|...
Organism:	Oncorhynchus clarkii henshawi
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62161285, gi|....

Description	E-value	Query Range	Subject Range
gi\|4261977 - gi\|4261977\|gb\|AAD14277.1\|S78299_1 ATPase 8 [Cottus kesslerii]	87.0	[0..1]	[53..1]
gi\|25057352, gi\|... - gi\|25057352\|ref\|NP_739806.1\| ATP synthase F0 subunit 8 [Hypoatherina tsurugae], gi\|25005724\|dbj\|BAC2...	85.0	[0..1]	[55..1]
gi\|32346950, gi\|... - gi\|32346953\|gb\|AAP75417.1\| ATP synthase 8 [Pomacentrus coelestis], gi\|32346950\|gb\|AAP75415.1\| ATP sy...	85.0	[0..1]	[55..1]
gi\|32346983, gi\|... - gi\|32346986\|gb\|AAP75439.1\| ATP synthase 8 [Pomacentrus nagasakiensis], gi\|32346983\|gb\|AAP75437.1\| AT... gi\|32347007, gi\|... - gi\|32347010\|gb\|AAP75455.1\| ATP synthase 8 [Pomacentrus reidi], gi\|32347007\|gb\|AAP75453.1\| ATP syntha... gi\|32346974 - gi\|32346974\|gb\|AAP75431.1\| ATP synthase 8 [Pomacentrus milleri]	85.0	[0..1]	[55..1]
gi\|32346566, gi\|... - gi\|32346566\|gb\|AAP75159.1\| ATP synthase 8 [Amphiprion allardi], gi\|32346563\|gb\|AAP75157.1\| ATP synth...	85.0	[0..1]	[55..1]
gi\|32346731 - gi\|32346731\|gb\|AAP75269.1\| ATP synthase 8 [Abudefduf bengalensis] gi\|32346761 - gi\|32346761\|gb\|AAP75289.1\| ATP synthase 8 [Abudefduf sparoides]	85.0	[0..1]	[55..1]
ATP8_SALAL - ATP synthase protein 8 OS=Salvelinus alpinus GN=mt-atp8 PE=3 SV=1	85.0	[0..1]	[55..1]
gi\|32347019 - gi\|32347019\|gb\|AAP75461.1\| ATP synthase 8 [Pomacentrus trilineatus]	85.0	[0..1]	[55..1]
gi\|32346749 - gi\|32346749\|gb\|AAP75281.1\| ATP synthase 8 [Abudefduf saxatilis] gi\|32346752 - gi\|32346752\|gb\|AAP75283.1\| ATP synthase 8 [Abudefduf septemfasciatus] gi\|32346755 - gi\|32346755\|gb\|AAP75285.1\| ATP synthase 8 [Abudefduf sexfasciatus] gi\|32346758 - gi\|32346758\|gb\|AAP75287.1\| ATP synthase 8 [Abudefduf sordidus] gi\|32346740 - gi\|32346740\|gb\|AAP75275.1\| ATP synthase 8 [Abudefduf lorenzi] gi\|32346746 - gi\|32346746\|gb\|AAP75279.1\| ATP synthase 8 [Abudefduf notatus] gi\|32346767 - gi\|32346767\|gb\|AAP75293.1\| ATP synthase 8 [Abudefduf troschelii] gi\|126143583, gi... - gi\|32346770\|gb\|AAP75295.1\| ATP synthase 8 [Abudefduf vaigiensis], gi\|126215450\|ref\|YP_001054858.1\| A... gi\|32346776 - gi\|32346776\|gb\|AAP75299.1\| ATP synthase 8 [Abudefduf whitleyi]	85.0	[0..1]	[55..1]
gi\|32346941 - gi\|32346941\|gb\|AAP75409.1\| ATP synthase 8 [Pomacentrus brachialis]	85.0	[0..1]	[55..1]

Back

Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLNPAPWF AILVFSWLVF LTVIPPKVLG HTFTNEPTSQ STEKAKPEPW NWPWH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.585027
Match:	PF00895.11
Description:	No description for PF00895.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits