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View Structure Prediction Details

Protein: gi|254239113, gi...
Organism: Pseudomonas aeruginosa C3719
Length: 231 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254239113, gi....

Description E-value Query
Range		 Subject
Range
UNG_AZOVD - Uracil-DNA glycosylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ung PE=3 SV=1
gi|53611343, gi|... - gi|67153345|ref|ZP_00415090.1| Uracil-DNA glycosylase [Azotobacter vinelandii AvOP], ref|ZP_00090188...
 0.0 [1..230] [1..230]
UNG_PSEAB - Uracil-DNA glycosylase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ung PE=3 SV=1
 0.0 [1..231] [1..231]
gi|95112272 - gi|95112272|emb|CAK16999.1| uracil-DNA glycosylase [Pseudomonas entomophila L48]
UNG_PSEE4 - Uracil-DNA glycosylase OS=Pseudomonas entomophila (strain L48) GN=ung PE=3 SV=1
 0.0 [1..231] [1..230]
UNG_PSEPK - Uracil-DNA glycosylase OS=Pseudomonas putida (strain KT2440) GN=ung PE=3 SV=1
 0.0 [1..231] [1..230]
gi|82739988, gi|... - gi|82739988|ref|ZP_00902762.1| Uracil-DNA glycosylase [Pseudomonas putida F1], gi|82712950|gb|EAP480...
 0.0 [1..231] [47..276]
UNG_PSEF5 - Uracil-DNA glycosylase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ung PE=3 SV=1
 0.0 [5..231] [4..230]
UNG_PSESM - Uracil-DNA glycosylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ung PE=3 SV=1
UNG_PSESM - Uracil-DNA glycosylase OS=Pseudomonas syringae pv. tomato GN=ung PE=3 SV=1
gi|213971138, gi... - gi|213971138|ref|ZP_03399257.1| uracil-DNA glycosylase [Pseudomonas syringae pv. tomato T1], gi|2139...
 0.0 [1..231] [1..230]
UNG_PSEU2 - Uracil-DNA glycosylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ung PE=3 SV=1
 0.0 [1..231] [1..230]
gi|110834507, gi... - gi|110834507|ref|YP_693366.1| uracil-DNA glycosylase [Alcanivorax borkumensis SK2], gi|110647618|emb...
 0.0 [2..230] [9..237]
UNG_PSEPF - Uracil-DNA glycosylase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ung PE=3 SV=1
 0.0 [5..231] [4..230]

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Predicted Domain #1
Region A:
Residues: [1-231] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNDDRIKL EASWKEALRE EFDKPYMKQL GEFLRQEKAA GKVIFPPGPL IFNALNTTPL  60
   61 ENVKVVIIGQ DPYHGPGQAH GLCFSVQPGV PTPPSLQNIY KELNRDLNIP IPNNGYLQRW 120
  121 AEQGVLLLNT SLTVEQAKAG SHANAGWQPF TDRVIEVVNE RCERLVFLLW GSHAQSKQKL 180
  181 IDPQRHLILK SAHPSPLSAY RGFLGNGHFS RTNKFLEQNG KTPIDWSLPD L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1eugA
Description: Uracil-DNA glycosylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
DNA N-glycosylase activity 4.32235853064174 bayes_pls_golite062009
uracil DNA N-glycosylase activity 4.14707882788321 bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds 3.89636585289546 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 2.84444466513934 bayes_pls_golite062009
hydrolase activity 1.91716804176625 bayes_pls_golite062009
single-strand selective uracil DNA N-glycosylase activity 1.65657095637032 bayes_pls_golite062009
catalytic activity 1.59111295908728 bayes_pls_golite062009
mismatch base pair DNA N-glycosylase activity 0.783383667044285 bayes_pls_golite062009
binding 0.587736812286194 bayes_pls_golite062009
structure-specific DNA binding 0.381118322219236 bayes_pls_golite062009
protein binding 0.272261244770552 bayes_pls_golite062009
nucleic acid binding 0.0311777202379154 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle