YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254243839, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254243839, gi....

Description	E-value	Query Range	Subject Range
gi\|152985312, gi... - gi\|94417746\|ref\|ZP_01297563.1\| hypothetical protein PaerP_01000524 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-38	[1..134]	[1..134]
gi\|49076904 - gi\|49076904\|gb\|AAT49613.1\| PA5274 [synthetic construct]	3.0E-38	[1..134]	[1..134]
gi\|224582450, gi... - gi\|224582450\|ref\|YP_002636248.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|62179216, gi\|... - gi\|62179216\|ref\|YP_215633.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent...	1.0E-35	[1..134]	[1..136]
gi\|213613069 - gi\|213613069\|ref\|ZP_03370895.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213647691 - gi\|213647691\|ref\|ZP_03377744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213850322 - gi\|213850322\|ref\|ZP_03381220.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|56414248, gi\|... - gi\|56414248\|ref\|YP_151323.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|214003305 - gi\|214003305\|ref\|ZP_03414040.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213023434 - gi\|213023434\|ref\|ZP_03337881.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213051866 - gi\|213051866\|ref\|ZP_03344744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213417566 - gi\|213417566\|ref\|ZP_03350708.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213425121 - gi\|213425121\|ref\|ZP_03357871.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|200390133, gi... - gi\|200390133\|ref\|ZP_03216744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|204930449, gi... - gi\|204930449\|ref\|ZP_03221379.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|205351905, gi... - gi\|205351905\|ref\|YP_002225706.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|207856082, gi... - gi\|207856082\|ref\|YP_002242733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197213843, gi... - gi\|197250140\|ref\|YP_002145589.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197241450, gi... - gi\|197263195\|ref\|ZP_03163269.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|197363171, gi... - gi\|197363171\|ref\|YP_002142808.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197939904, gi... - gi\|198245388\|ref\|YP_002214607.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=rnk] [protein=nucleoside diphosphate kinase regulator] [protein_id=YP_005236325.1] [location=c... gi\|16763993, gi\|... - gi\|16763993\|ref\|NP_459608.1\| nucleoside diphosphate kinase regulator [Salmonella typhimurium LT2], g... gi\|29138282, gi\|... - gi\|29142651\|ref\|NP_805993.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|25511993, gi\|... - gi\|25511993\|pir\|\|AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] - Salmonella e... gi\|16759576 - gi\|16759576\|ref\|NP_455193.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|238911567 - gi\|238911567\|ref\|ZP_04655404.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|195631988, gi... - gi\|195631988\|gb\|EDX50508.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|194409243, gi... - gi\|194450939\|ref\|YP_002044647.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|194471151, gi... - gi\|194471151\|ref\|ZP_03077135.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|194711103, gi... - gi\|194735601\|ref\|YP_002113733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|205334065, gi... - gi\|205334065\|gb\|EDZ20829.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168236603, gi... - gi\|197290337\|gb\|EDY29693.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|205339721, gi... - gi\|205339721\|gb\|EDZ26485.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168260874, gi... - gi\|205349901\|gb\|EDZ36532.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|161615176, gi... - gi\|161615176\|ref\|YP_001589141.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|167550854, gi... - gi\|205324214\|gb\|EDZ12053.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|167990616, gi... - gi\|205330837\|gb\|EDZ17601.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente...	1.0E-35	[1..134]	[1..136]
gi\|71557434, gi\|... - gi\|71736881\|ref\|YP_277097.1\| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. phase...	4.0E-35	[2..132]	[3..134]
gi\|36787334, gi\|... - gi\|37527898\|ref\|NP_931243.1\| nucleoside diphosphate kinase regulator [Photorhabdus luminescens subsp...	6.0E-35	[1..134]	[1..136]
gi\|46156715 - gi\|46156715\|ref\|ZP_00132245.2\| COG0782: Transcription elongation factor [Haemophilus somnus 2336]	8.0E-35	[3..124]	[35..167]
gi\|213970732, gi... - gi\|213970732\|ref\|ZP_03398857.1\| regulator of nucleoside diphosphate kinase [Pseudomonas syringae pv.... gi\|28867461, gi\|... - gi\|28867461\|ref\|NP_790080.1\| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv. tomat... tr\|Q88B04\|Q88B04... - Regulator of nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rnk...	1.0E-34	[2..132]	[3..134]
gi\|95113250 - gi\|95113250\|emb\|CAK17978.1\| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila L48] gi\|104784263, gi... - gi\|95113250\|emb\|CAK17978.1\| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila L48]...	2.0E-34	[2..132]	[3..134]
gi\|78195058, gi\|... - gi\|78223803\|ref\|YP_385550.1\| GreA/GreB family elongation factor [Geobacter metallireducens GS-15], g...	2.0E-34	[1..133]	[1..141]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPPITITR LDLQRLERLL DGLDEFGPAA EALEAELSRA QVVGHDEIPP GVVTMNSTVR  60
   61 CREESSGKEY TLTLVYPEDV AGEGKVSILA PVGTALLGLT IGQTIDWPAP SGKTLKLTLL 120
  121 EIEYQPEAAG DYAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	2pn0A
Description:	No description for 2pn0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits