YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126169316, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126169316, gi....

Description	E-value	Query Range	Subject Range
gi\|71736786, gi\|... - gi\|71736786\|ref\|YP_276875.1\| sulfur carrier protein ThiS [Pseudomonas syringae pv. phaseolicola 1448...	1.0E-20	[1..66]	[25..90]
gi\|78195384, gi\|... - gi\|78224129\|ref\|YP_385876.1\| ThiS, thiamine-biosynthesis [Geobacter metallireducens GS-15], gi\|78195...	7.0E-19	[1..66]	[34..98]
gi\|82716740, gi\|... - gi\|82736097\|ref\|ZP_00898957.1\| ThiS, thiamine-biosynthesis [Pseudomonas putida F1], gi\|82716740\|gb\|E... gi\|26991781, gi\|... - gi\|26991781\|ref\|NP_747206.1\| sulfur carrier protein ThiS [Pseudomonas putida KT2440], gi\|24986891\|gb...	1.0E-18	[1..66]	[27..92]
gi\|23102633, gi\|... - gi\|67154907\|ref\|ZP_00416652.1\| ThiS, thiamine-biosynthesis [Azotobacter vinelandii AvOP], ref\|ZP_000... gi\|67089040, gi\|... - gi\|67154907\|ref\|ZP_00416652.1\| ThiS, thiamine-biosynthesis [Azotobacter vinelandii AvOP], gi\|6708904...	1.0E-18	[1..66]	[1..66]
gi\|94414782, gi\|... - gi\|94414782\|ref\|ZP_01294636.1\| hypothetical protein PaerP_01003362 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-18	[1..66]	[1..66]
gi\|70733136, gi\|... - gi\|70733136\|ref\|YP_262909.1\| sulfur carrier protein ThiS [Pseudomonas fluorescens Pf-5], gi\|68347435...	3.0E-18	[1..66]	[12..77]
gi\|49082326 - gi\|49082326\|gb\|AAT50563.1\| PA0380 [synthetic construct]	4.0E-18	[1..66]	[1..66]
gi\|115421549, gi... - gi\|187476963\|ref\|YP_784987.1\| thiamine biosynthesis protein [Bordetella avium 197N], gi\|115421549\|em...	4.0E-18	[1..66]	[1..66]
gi\|25330430 - pir\|\|AE1974 hypothetical protein asr1344 [imported] - Nostoc sp. (strain PCC 7120) gi\|17228839, gi\|... - gi\|17228839\|ref\|NP_485387.1\| hypothetical protein asr1344 [Nostoc sp. PCC 7120], gi\|17130691\|dbj\|BAB...	4.0E-18	[1..66]	[5..70]
THIG_MAGSA - Thiazole synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=thiG PE=3 SV=1	5.0E-18	[1..66]	[1..66]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIQLNGEPF ELPDAQSVAD LLARLELGGR RVAVELNLDI VPRSQHASTA LKDGDRVEIV  60
   61 HAIGGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1f0zA
Description:	Thiamin biosynthesis sulfur carrier protein ThiS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.615221168962415	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: