YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254237344, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254237344, gi....

Description	E-value	Query Range	Subject Range
gi\|150963605, gi... - gi\|94415738\|ref\|ZP_01295574.1\| hypothetical protein PaerP_01002515 [Pseudomonas aeruginosa PA7], gi\|...	5.0E-43	[1..189]	[1..189]
gi\|110805076, gi... - gi\|110805076\|ref\|YP_688596.1\| putative cytochrome [Shigella flexneri 5 str. 8401], gi\|110614624\|gb\|A...	2.0E-40	[1..185]	[26..210]
gi\|95112949 - gi\|95112949\|emb\|CAK17677.1\| putative cytochrome, b561 family [Pseudomonas entomophila L48] gi\|104783962, gi... - gi\|95112949\|emb\|CAK17677.1\| putative cytochrome, b561 family [Pseudomonas entomophila L48], gi\|10478...	3.0E-40	[1..182]	[1..182]
gi\|48730903, gi\|... - gi\|77461506\|ref\|YP_351013.1\| cytochrome B561 [Pseudomonas fluorescens Pf0-1], gi\|77385509\|gb\|ABA7702...	7.0E-40	[1..182]	[1..182]
gi\|26991659, gi\|... - gi\|26991659\|ref\|NP_747084.1\| cytochrome B561 [Pseudomonas putida KT2440], gi\|24986756\|gb\|AAN70548.1\|...	1.0E-39	[1..182]	[1..182]
gi\|82777531, gi\|... - gi\|82777531\|ref\|YP_403880.1\| putative cytochrome [Shigella dysenteriae Sd197], gi\|81241679\|gb\|ABB623...	1.0E-39	[1..185]	[1..185]
tr\|I7B6Q9\|I7B6Q9... - Cytochrome B561 OS=Pseudomonas putida (strain DOT-T1E) GN=yceJ PE=4 SV=1 gi\|148514115, gi... - gi\|82739851\|ref\|ZP_00902634.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82713067\|g...	2.0E-39	[1..182]	[1..182]
gi\|117623244, gi... - gi\|117623244\|ref\|YP_852157.1\| YceJ [Escherichia coli APEC O1], gi\|115512368\|gb\|ABJ00443.1\| YceJ [Esc... gi\|218557939, gi... - gi\|218557939\|ref\|YP_002390852.1\| putative cytochrome b561 [Escherichia coli S88], gi\|218364708\|emb\|C...	5.0E-39	[1..185]	[1..185]
gi\|189354570, gi... - gi\|189354570\|gb\|EDU72989.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|168747169, gi... - gi\|188018011\|gb\|EDU56133.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|168767716, gi... - gi\|189363250\|gb\|EDU81669.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|168764469, gi... - gi\|189365537\|gb\|EDU83953.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|168783587, gi... - gi\|188999098\|gb\|EDU68084.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|168773902, gi... - gi\|187770369\|gb\|EDU34213.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|209398357, gi... - gi\|209398357\|ref\|YP_002269903.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia... gi\|124498772, gi... - gi\|124531153\|ref\|ZP_01701508.1\| cytochrome B561 [Escherichia coli B], gi\|124498772\|gb\|EAY46275.1\| cy... gi\|208822175, gi... - gi\|208822175\|ref\|ZP_03262494.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia ... gi\|217318776, gi... - gi\|217328349\|ref\|ZP_03444431.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia ... gi\|209911570, gi... - gi\|209918311\|ref\|YP_002292395.1\| putative cytochrome [Escherichia coli SE11], gi\|209911570\|dbj\|BAG76... gi\|218694592, gi... - gi\|218694592\|ref\|YP_002402259.1\| putative cytochrome b561 [Escherichia coli 55989], gi\|218351324\|emb... gi\|189375950, gi... - gi\|189375950\|gb\|EDU94366.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|254591839, gi... - gi\|254792439\|ref\|YP_003077276.1\| predicted cytochrome b561 [Escherichia coli O157:H7 str. TW14359], ... gi\|189370451, gi... - gi\|189370451\|gb\|EDU88867.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia coli... gi\|187732021, gi... - gi\|187732021\|ref\|YP_001880772.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Shigella bo... gi\|170020547, gi... - gi\|170020547\|ref\|YP_001725501.1\| cytochrome B561 [Escherichia coli ATCC 8739], gi\|169755475\|gb\|ACA78... gi\|195935446 - gi\|195935446\|ref\|ZP_03080828.1\| putative cytochrome [Escherichia coli O157:H7 str. EC4024] gi\|192957227, gi... - gi\|193069479\|ref\|ZP_03050433.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia ... gi\|208816353, gi... - gi\|208816353\|ref\|ZP_03257532.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia ... gi\|208726969, gi... - gi\|208807168\|ref\|ZP_03249505.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia ... gi\|13360899, gi\|... - gi\|15830689\|ref\|NP_309462.1\| putative cytochrome [Escherichia coli O157:H7], gi\|13360899\|dbj\|BAB3485... gi\|13360899, gi\|... - gi\|15830689\|ref\|NP_309462.1\| putative cytochrome [Escherichia coli O157:H7 str. Sakai], gi\|13360899\|... gi\|209773560, gi... - pir\|\|G85667 probable cytochrome Z1693 [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801174, gi\|... - gi\|15801174\|ref\|NP_287191.1\| putative cytochrome [Escherichia coli O157:H7 EDL933], gi\|12514592\|gb\|A... gi\|157079647, gi... - gi\|75190116\|ref\|ZP_00703383.1\| COG3038: Cytochrome B561 [Escherichia coli E24377A], gi\|157157617\|ref... gi\|73855096, gi\|... - gi\|74311619\|ref\|YP_310038.1\| putative cytochrome [Shigella sonnei Ss046], gi\|73855096\|gb\|AAZ87803.1\|... gi\|157160584, gi... - gi\|157160584\|ref\|YP_001457902.1\| nickel-dependent hydrogenase b-type cytochrome subunit [Escherichia... gi\|75210331, gi\|... - gi\|75210331\|ref\|ZP_00710493.1\| COG3038: Cytochrome B561 [Escherichia coli B171], gi\|194428433\|ref\|ZP... gi\|193064534, gi... - gi\|75257494\|ref\|ZP_00728997.1\| COG3038: Cytochrome B561 [Escherichia coli E22], gi\|193064534\|ref\|ZP_...	5.0E-39	[1..185]	[1..185]
gi\|91210208, gi\|... - gi\|91210208\|ref\|YP_540194.1\| cytochrome b561-like protein 2 [Escherichia coli UTI89], gi\|91071782\|gb... gi\|237706957, gi... - gi\|237706957\|ref\|ZP_04537438.1\| cytochrome b561 [Escherichia sp. 3_2_53FAA], gi\|226898167\|gb\|EEH8442...	6.0E-39	[1..185]	[5..189]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWRNTSSRY GVFSLFLHWG SALVVFGLFG LGLWMRELSY YDPWYHPAPA LHKSIGILLA  60
   61 IALLVRIVWR FVSPPPPAPA NHGPLTRVAS KLGHLALYGL LLAVIVAGYL ISTADGEPIS 120
  121 VFGWFSVPAT LSGLPDQADV AGEIHLYLAW ALVVFAVLHA LAALKHHFVD RDPTLKRMLG 180
  181 RSSNDQQPR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.91
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.349353660965659	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: