YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126195721, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126195721, gi....

Description	E-value	Query Range	Subject Range
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	8.0E-52	[1..146]	[1..146]
gi\|213969129, gi... - gi\|213969129\|ref\|ZP_03397268.1\| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Pseudomona... FABZ_PSESM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. tomato (strain DC3... FABZ_PSESM - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. tomato GN=fabZ ...	1.0E-51	[1..146]	[1..146]
gi\|49075978 - gi\|49075978\|gb\|AAT49514.1\| PA3645 [synthetic construct]	2.0E-51	[1..146]	[1..146]
FABZ_PSEPF - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas fluorescens (strain Pf0-1) GN=f...	2.0E-51	[1..146]	[1..146]
FABZ_PSEF5 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas fluorescens (strain Pf-5 / ATCC...	1.0E-50	[1..146]	[1..146]
FABZ_PSEE4 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas entomophila (strain L48) GN=fab... gi\|95112171 - gi\|95112171\|emb\|CAK16898.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Pseudomonas en...	4.0E-50	[1..146]	[1..146]
gi\|24983083, gi\|... - gi\|26988334\|ref\|NP_743759.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas putida KT2440], gi\|2...	5.0E-50	[1..146]	[18..163]
FABZ_PSEP1 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain F1 / ATCC 700007... tr\|I7BG72\|I7BG72... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain DOT-T1E) GN=fabZ... tr\|E4RFQ7\|E4RFQ7... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain BIRD-1) GN=fabZ ... FABZ_PSEPG - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain GB-1) GN=fabZ PE... FABZ_PSEPK - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain KT2440) GN=fabZ ...	5.0E-50	[1..146]	[1..146]
gi\|55670133, gi\|... - gi\|55670136\|pdb\|1U1Z\|F Chain F, The Structure Of (3r)-Hydroxyacyl-Acp Dehydratase (Fabz), gi\|5567013...	3.0E-49	[3..146]	[23..166]
gi\|67156401 - gi\|67156401\|ref\|ZP_00417994.1\| Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Azotobacter... gi\|67156401, gi\|... - gi\|67156401\|ref\|ZP_00417994.1\| Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Azotobacter...	8.0E-49	[1..146]	[23..168]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDINEIREY LPHRYPFLLV DRVVELDIEG KRIRAYKNVS INEPFFNGHF PEHPIMPGVL  60
   61 IIEAMAQAAG ILGFKMLDVK PADGTLYYFV GSDKLRFRQP VLPGDQLQLH AKFISVKRSI 120
  121 WKFDCHATVD DKPVCSAEII CAERKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: