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View Structure Prediction Details

Protein: gi|57166763, gi|...
Organism: Campylobacter jejuni RM1221
Length: 100 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57166763, gi|....

Description E-value Query
Range
Subject
Range
gi|121613360, gi... - gi|87305943|ref|ZP_01088096.1| transformation system protein [Campylobacter jejuni subsp. jejuni 81-...
gi|86152558, gi|... - gi|86152558|ref|ZP_01070763.1| transformation system protein [Campylobacter jejuni subsp. jejuni HB9...
139.0 [0..1] [100..1]
gi|109691370, gi... - gi|112805371|gb|EAU02715.1| transformation system protein [Campylobacter jejuni subsp. doylei 269.97...
135.0 [0..1] [100..1]
gi|57168301, gi|... - gi|57168301|ref|ZP_00367440.1| transformation system protein [Campylobacter coli RM2228], gi|5702067...
61.0 [0..1] [98..1]
gi|57242170, gi|... - gi|57242170|ref|ZP_00370110.1| transformation system protein [Campylobacter upsaliensis RM3195], gi|...
55.0 [0..1] [98..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAFILIES ISAITIISLI FIGIFYYYIQ LYKNYENLNI FERLYKLQEE LYEKPIFKTI  60
   61 ILQTSALKPI VLQEQFVNDG IFQFQKLYFQ DQNYSVYFKE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.536 a.4.1 Homeodomain-like
View Download 0.531 a.64.1 Saposin
View Download 0.527 a.4.1 Homeodomain-like
View Download 0.501 a.4.1 Homeodomain-like
View Download 0.492 a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle