YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57166465, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57166465, gi|....

Description	E-value	Query Range	Subject Range
gi\|57242347, gi\|... - gi\|57242347\|ref\|ZP_00370286.1\| flagellar biosynthetic protein FliP [Campylobacter upsaliensis RM3195...	289.0	[0..1]	[244..1]
gi\|87305638, gi\|... - gi\|87305638\|ref\|ZP_01087792.1\| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jeju... gi\|30721657 - gi\|30721657\|gb\|AAP34259.1\| FliP [Campylobacter jejuni]	289.0	[0..1]	[244..1]
gi\|28211318, gi\|... - gi\|28211318\|ref\|NP_782262.1\| flagellar biosynthesis protein FliP [Clostridium tetani E88], gi\|282037...	289.0	[0..5]	[242..23]
gi\|85840892, gi\|... - gi\|86152107\|ref\|ZP_01070319.1\| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jeju...	288.0	[0..1]	[244..1]
gi\|68529001, gi\|... - gi\|94314220\|ref\|YP_587429.1\| flagellar biosynthesis protein FliP [Ralstonia metallidurans CH34], gi\|...	287.0	[0..13]	[243..34]
gi\|110829741, gi... - gi\|111612881\|ref\|ZP_01399965.1\| Flagellar biosynthesis pathway component FliP-like [Verminephrobacte...	286.0	[0..9]	[243..127]
gi\|91776320, gi\|... - gi\|91776320\|ref\|YP_546076.1\| flagellar biosynthesis protein FliP [Methylobacillus flagellatus KT], g...	286.0	[0..15]	[243..23]
gi\|91799837, gi\|... - gi\|92116943\|ref\|YP_576672.1\| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14], gi\|...	286.0	[0..2]	[244..9]
gi\|57020942, gi\|... - gi\|57167820\|ref\|ZP_00366960.1\| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228], g...	286.0	[0..1]	[244..1]
gi\|71743098, gi\|... - gi\|71836268\|ref\|ZP_00676037.1\| Flagellar transport protein FliP [Pelobacter propionicus DSM 2379], g...	285.0	[0..16]	[243..53]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLFLLL SMSLFAAEAT IPTVNLSLSA PNTPNQLVTT LNIVIVLTIL ALAPSIVFVM  60
   61 TSFLRLIVVF SFLRQAMGTQ SMPPNTILVT LALILTFFIM EPVATKSYNE GIKPYLAEKI 120
  121 GYEEAFIKGA KPFKDFMLKN TREKDLALFY RIRNLPNPKT IDDVPLTVLV PAFMISELKT 180
  181 AFEIGFLIYL PFLVIDMVVS SVLMAMGMMM LPPTMISLPF KLLIFVLVDG WNLLVQRLVE 240
  241 SFVT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	112.769551
Match:	PF00813.11
Description:	No description for PF00813.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits