YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165805, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165805, gi|....

Description	E-value	Query Range	Subject Range
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	267.0	[0..1]	[263..1]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	261.0	[0..1]	[263..1]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	261.0	[0..1]	[263..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	257.0	[0..1]	[260..81]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	256.0	[0..1]	[261..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	255.0	[0..1]	[261..1]
gi\|86157777, gi\|... - gi\|86157777\|ref\|YP_464562.1\| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C], gi...	252.0	[0..2]	[262..7]
gi\|57505521, gi\|... - gi\|57505521\|ref\|ZP_00371448.1\| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM...	251.0	[0..1]	[263..1]
gi\|34558104 - gi\|34558104\|ref\|NP_907919.1\| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740] gi\|34483822 - gi\|34483822\|emb\|CAE10819.1\| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinoge...	251.0	[0..1]	[263..1]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	251.0	[0..1]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRSLHTAAT GMVAQQTQID VTSNNIANVN TAGFKKSRAE FADLMYQVMK YAGTSTSATT  60
   61 LSPSGIEVGV GVRPTAVTKV FTEGNLKSTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGLDMAIAG NGFFQIQLPD GTIGYTRNGQ FTKDNEGNIV NSDGYRLLPE MTIPEGATAI  60
   61 NVATDGTVSV MLPGEQQETQ IGQVELVQFI NPAGLHSMGD NLYLETGASG APVAGIAGQD 120
  121 GLGTIRHGFI ELSNVQLVEE MTDLITGQRA YEAGSKAITT SDDMLGIVNQ LKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits