YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237776, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237776, gi|....

Description	E-value	Query Range	Subject Range
gi\|165924663, gi... - gi\|165924663\|ref\|ZP_02220495.1\| zinc transporter ZitB [Yersinia pestis biovar Orientalis str. F19910... gi\|166011602, gi... - gi\|166011602\|ref\|ZP_02232500.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. E1979001]... gi\|166211318, gi... - gi\|166211318\|ref\|ZP_02237353.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. B42003004... gi\|167050467, gi... - gi\|167399759\|ref\|ZP_02305277.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|166962575, gi... - gi\|167419834\|ref\|ZP_02311587.1\| zinc transporter ZitB [Yersinia pestis biovar Orientalis str. MG05-1... gi\|167056778, gi... - gi\|167423929\|ref\|ZP_02315682.1\| zinc transporter ZitB [Yersinia pestis biovar Mediaevalis str. K1973... gi\|145599832, gi... - gi\|145599832\|ref\|YP_001163908.1\| zinc transporter ZitB [Yersinia pestis Pestoides F], gi\|145211528\|g... gi\|22126926, gi\|... - gi\|22126926\|ref\|NP_670349.1\| zinc transporter ZitB [Yersinia pestis KIM], gi\|21959965\|gb\|AAM86600.1\|... gi\|16121429, gi\|... - gi\|218928297\|ref\|YP_002346172.1\| zinc transporter ZitB [Yersinia pestis CO92], gi\|16121429\|ref\|NP_40... gi\|45435719, gi\|... - gi\|45440861\|ref\|NP_992400.1\| zinc transporter ZitB [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|108778517, gi... - gi\|108806604\|ref\|YP_650520.1\| zinc transporter ZitB [Yersinia pestis Antiqua], gi\|108778517\|gb\|ABG12... gi\|229679239, gi... - gi\|229903469\|ref\|ZP_04518582.1\| zinc efflux system [Yersinia pestis Nepal516], gi\|229679239\|gb\|EEO75... gi\|229894007, gi... - gi\|229894007\|ref\|ZP_04509193.1\| zinc efflux system [Yersinia pestis Pestoides A], gi\|229703892\|gb\|EE... gi\|229689517, gi... - gi\|229843170\|ref\|ZP_04463316.1\| zinc efflux system [Yersinia pestis biovar Orientalis str. India 195... gi\|149366871, gi... - gi\|149366871\|ref\|ZP_01888905.1\| putative cation transport protein [Yersinia pestis CA88-4125], gi\|14... gi\|229841066, gi... - gi\|229841066\|ref\|ZP_04461225.1\| zinc efflux system [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|165938380, gi... - gi\|89105186\|ref\|ZP_01177710.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pestis biovar Ori... ZITB_YERPE - Zinc transporter ZitB OS=Yersinia pestis GN=zitB PE=3 SV=1 gi\|167470005 - gi\|167470005\|ref\|ZP_02334709.1\| zinc transporter ZitB [Yersinia pestis FV-1] gi\|162353525, gi... - gi\|77636411\|ref\|ZP_00798485.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pestis Angola], g... gi\|152959323, gi... - gi\|77632122\|ref\|ZP_00794708.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pseudotuberculosi...	225.0	[0..3]	[289..11]
CZCD_BACSU - Cadmium, cobalt and zinc/H(+)-K(+) antiporter OS=Bacillus subtilis (strain 168) GN=czcD PE=1 SV=1 gi\|221314921 - gi\|221314921\|ref\|ZP_03596726.1\| cation-efflux system membrane protein [Bacillus subtilis subsp. subt... gi\|221319843 - gi\|221319843\|ref\|ZP_03601137.1\| cation-efflux system membrane protein [Bacillus subtilis subsp. subt... gi\|221324123 - gi\|221324123\|ref\|ZP_03605417.1\| cation-efflux system membrane protein [Bacillus subtilis subsp. subt... CZCD_BACSU - Cadmium, cobalt and zinc/H(+)-K(+) antiporter OS=Bacillus subtilis GN=czcD PE=1 SV=1	225.0	[0..4]	[287..10]
gi\|28628306 - gi\|28628306\|gb\|AAO38709.1\| cation diffusion facilitator 10 [Stylosanthes hamata]	224.0	[0..2]	[291..121]
ZITB_YERPS - Zinc transporter zitB OS=Yersinia pseudotuberculosis GN=zitB PE=3 SV=1 ZITB_YERPS - Zinc transporter ZitB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zitB PE=3 SV=1	224.0	[0..3]	[289..11]
gi\|238785693, gi... - gi\|77956875\|ref\|ZP_00820950.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia bercovieri ATCC 4...	224.0	[0..2]	[289..10]
gi\|21228880, gi\|... - gi\|21228880\|ref\|NP_634802.1\| cobalt-zinc-cadmium resistance protein [Methanosarcina mazei Go1], gi\|2...	224.0	[0..3]	[295..38]
gi\|196250048, gi... - gi\|196250048\|ref\|ZP_03148743.1\| cation diffusion facilitator family transporter [Geobacillus sp. G11... gi\|1944409 - gi\|1944409\|dbj\|BAA19587.1\| membrane protein [Geobacillus stearothermophilus]	223.0	[0..3]	[289..19]
gi\|88933772, gi\|... - gi\|88933772\|ref\|ZP_01139438.1\| Cation efflux protein [Dehalococcoides sp. BAV1], gi\|88913745\|gb\|EAR3... gi\|73659898, gi\|... - gi\|73748182\|ref\|YP_307421.1\| cation efflux family protein [Dehalococcoides sp. CBDB1], gi\|73659898\|e...	223.0	[0..3]	[290..4]
gi\|56421416, gi\|... - gi\|56421416\|ref\|YP_148734.1\| cation efflux transporter [Geobacillus kaustophilus HTA426], gi\|5638125...	221.0	[0..2]	[289..18]
gi\|18977745, gi\|... - gi\|18977745\|ref\|NP_579102.1\| cation transporter, putative [Pyrococcus furiosus DSM 3638], gi\|1889348...	221.0	[0..1]	[282..2]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQKKATLV ASLCAIVLAL VKFIVGLTSG SVAVLSSAID SLMDFAISAF NFLALKKSSQ  60
   61 KANENYNFGF SKIEALMGLL EGVFIVGVGI FIFYESILKI YYKEEIKDLN SSIYVMIFAL 120
  121 IMTFFLVLFL NYVAKKTKSL IIESDALHYK TDCLTNACTL GALVLIYFTN LHIIDAIFGI 180
  181 VISLYTAFSA FKIIKKALAF LMDEALPKEQ VDKICTLISN NPEIISYHEL KTRKTPSCNY 240
  241 LSVHLVFCPI ISLLNAHKIS DEIEEGVRKM FENEKWDIQI HLDPYDDAEQ ERQRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.09691
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.80415740186568	bayes_pls_golite062009
ion transmembrane transporter activity	4.7111088918389	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.31582321262476	bayes_pls_golite062009
cadmium ion transmembrane transporter activity	3.70168909103546	bayes_pls_golite062009
transporter activity	2.75060749825863	bayes_pls_golite062009
transmembrane transporter activity	2.61478776136804	bayes_pls_golite062009
substrate-specific transporter activity	2.49211952065411	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.29284396884348	bayes_pls_golite062009
iron ion transmembrane transporter activity	1.28901626534199	bayes_pls_golite062009
efflux transmembrane transporter activity	1.25549862417229	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.01332825422669	bayes_pls_golite062009
binding	0.80253540865533	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.4725448545847	bayes_pls_golite062009
cation channel activity	0.114605430567645	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0866732167896778	bayes_pls_golite062009
protein binding	0.0557829197821959	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: