YRC Public Data Repository - Protein Structure Prediction

Protein:	TUSD_SALCH
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUSD_SALCH.

Description	E-value	Query Range	Subject Range
gi\|29144319, gi\|... - gi\|29144319\|ref\|NP_807661.1\| hypothetical protein t4054 [Salmonella enterica subsp. enterica serovar... gi\|16762832 - gi\|16762832\|ref\|NP_458449.1\| hypothetical protein STY4347 [Salmonella enterica subsp. enterica serov... gi\|213608033 - gi\|213608033\|ref\|ZP_03368859.1\| hypothetical protein SentesTyp_00227 [Salmonella enterica subsp. ent... gi\|213649027 - gi\|213649027\|ref\|ZP_03379080.1\| hypothetical protein SentesTy_18148 [Salmonella enterica subsp. ente... TUSD_SALTI, YHEN... - (Q8Z1Y3) UPF0163 protein yheN, Sulfurtransferase tusD OS=Salmonella typhi GN=tusD PE=3 SV=1 gi\|213865463 - gi\|213865463\|ref\|ZP_03387582.1\| hypothetical protein SentesT_37282 [Salmonella enterica subsp. enter... gi\|214000190 - gi\|214000190\|ref\|ZP_03410925.1\| hypothetical protein Salmonellentericaenterica_05831 [Salmonella ent... gi\|213163702 - gi\|213163702\|ref\|ZP_03349412.1\| hypothetical protein Salmoneentericaenterica_28293 [Salmonella enter... gi\|213426775 - gi\|213426775\|ref\|ZP_03359525.1\| hypothetical protein SentesTyphi_14915 [Salmonella enterica subsp. e... gi\|213586429 - gi\|213586429\|ref\|ZP_03368255.1\| hypothetical protein SentesTyph_36207 [Salmonella enterica subsp. en... TUSD_SALTI - Sulfurtransferase TusD OS=Salmonella typhi GN=tusD PE=3 SV=1	172.0	[0..1]	[128..1]
TUSD_SHIF8 - Sulfurtransferase TusD OS=Shigella flexneri serotype 5b (strain 8401) GN=tusD PE=3 SV=1 gi\|24114609, gi\|... - gi\|24114609\|ref\|NP_709119.1\| hypothetical protein SF3363 [Shigella flexneri 2a str. 301], gi\|2405380... TUSD_SHIFL - Sulfurtransferase TusD OS=Shigella flexneri GN=tusD PE=3 SV=1 gi\|30043631, gi\|... - gi\|30065369\|ref\|NP_839540.1\| hypothetical protein S4399 [Shigella flexneri 2a str. 2457T], gi\|300436...	171.0	[0..1]	[128..1]
DSRE_ALLVD - Putative sulfurtransferase DsrE OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801... DSRE_CHRVI - Putative sulfurtransferase dsrE OS=Chromatium vinosum GN=dsrE PE=1 SV=1	171.0	[0..1]	[128..1]
gi\|253979330, gi... - gi\|254290023\|ref\|YP_003055771.1\| hypothetical protein ECD_03196 [Escherichia coli BL21(DE3)], gi\|253... TUSD_ECO8A - Sulfurtransferase TusD OS=Escherichia coli O8 (strain IAI1) GN=tusD PE=3 SV=1 gi\|242378871, gi... - gi\|251786598\|ref\|YP_003000902.1\| hypothetical protein B21_03147 [Escherichia coli BL21], gi\|24237887... TUSD_ECOSE - Sulfurtransferase TusD OS=Escherichia coli (strain SE11) GN=tusD PE=3 SV=1 gi\|253975174, gi... - gi\|254163273\|ref\|YP_003046381.1\| hypothetical protein ECB_03196 [Escherichia coli B str. REL606], gi... TUSD_ECOHS - Sulfurtransferase TusD OS=Escherichia coli O9:H4 (strain HS) GN=tusD PE=3 SV=1 TUSD_ECO24 - Sulfurtransferase TusD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tusD PE=3 SV=1	171.0	[0..1]	[128..1]
gi\|77957341 - gi\|77957341\|ref\|ZP_00821400.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	171.0	[0..1]	[128..4]
TUSD_SHISS - Sulfurtransferase TusD OS=Shigella sonnei (strain Ss046) GN=tusD PE=3 SV=1 gi\|188495980, gi... - gi\|75510631\|ref\|ZP_00733529.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	170.0	[0..1]	[128..1]
gi\|68304956 - gi\|68304956\|gb\|AAY89967.1\| predicted DsrE [uncultured bacterium BAC13K9BAC]	170.0	[0..1]	[128..1]
YHEN_ECOL6, TUSD... - (Q8FCY1) UPF0163 protein yheN, Sulfurtransferase TusD OS=Escherichia coli O6 GN=tusD PE=3 SV=1 gi\|227839358, gi... - gi\|227883479\|ref\|ZP_04001284.1\| Dsr family protein DsrE [Escherichia coli 83972], gi\|227839358\|gb\|EE... gi\|237703076, gi... - gi\|237703076\|ref\|ZP_04533557.1\| sulfurtransferase tusD [Escherichia sp. 3_2_53FAA], gi\|226902340\|gb\|... TUSD_ECOL6 - Sulfurtransferase TusD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tusD PE=3 S... gi\|75241560, gi\|... - gi\|75241560\|ref\|ZP_00725405.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... TUSD_ECO45 - Sulfurtransferase TusD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tusD PE=3 SV=1 TUSD_ECOL5 - Sulfurtransferase TusD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tusD PE=3 SV=1 TUSD_ECOK1 - Sulfurtransferase TusD OS=Escherichia coli O1:K1 / APEC GN=tusD PE=3 SV=1 TUSD_ECOUT - Sulfurtransferase TusD OS=Escherichia coli (strain UTI89 / UPEC) GN=tusD PE=3 SV=1	170.0	[0..1]	[128..1]
gi\|90109182, gi\|... - gi\|90109182\|pdb\|2D1P\|G Chain G, Crystal Structure Of Heterohexameric Tusbcd Proteins, Which Are Cruc...	170.0	[0..1]	[128..13]
TUSD_VIBVU - Sulfurtransferase TusD homolog OS=Vibrio vulnificus (strain CMCP6) GN=tusD PE=3 SV=1 YD33_VIBVU, TUSD... - (Q8DCR3) Hypothetical UPF0163 protein VV11333, (Q8DCR3) UPF0163 protein VV11333, Sulfurtransferase T...	170.0	[0..1]	[128..4]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYAIMVTGP AYGTQQASSA LQFAHALLNE GHELASVFFY REGVYNANLL TSPASDEYDL  60
   61 VRAWQKLNTQ HGVALNICVA AALRRGIIDE TEAGRLALPS ANLQPGFTLS GLGALAEASL 120
  121 TCDRVVQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	2d1pA
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits