YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116220415, gi...
Organism:	Vibrio cholerae V51
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116220415, gi....

Description	E-value	Query Range	Subject Range
gi\|90579339, gi\|... - gi\|90579339\|ref\|ZP_01235149.1\| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum ...	210.0	[0..1]	[246..1]
tr\|D7H9T4\|D7H9T4... - Pyruvate formate-lyase 1 activating enzyme OS=Vibrio cholerae RC385 GN=VCRC385_01301 PE=4 SV=1 gi\|150420196, gi... - gi\|75824114\|ref\|ZP_00753580.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio cholerae RC...	209.0	[0..1]	[246..1]
gi\|90412861, gi\|... - gi\|90412861\|ref\|ZP_01220861.1\| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium p...	206.0	[0..1]	[246..1]
gi\|205358099, gi... - gi\|205358099\|ref\|ZP_02575805.2\| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subs... gi\|62127127, gi\|... - gi\|62179494\|ref\|YP_215911.1\| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. ...	205.0	[0..2]	[246..48]
gi\|254229008, gi... - gi\|75856412\|ref\|ZP_00764041.1\| COG1180: Pyruvate-formate lyase-activating enzyme [Vibrio sp. Ex25], ...	205.0	[0..1]	[246..1]
gi\|91225254, gi\|... - gi\|91225254\|ref\|ZP_01260422.1\| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G0...	204.0	[0..1]	[246..1]
gi\|46914345, gi\|... - gi\|54309906\|ref\|YP_130926.1\| pyruvate formate lyase-activating enzyme 1 [Photobacterium profundum SS...	203.0	[0..1]	[246..1]
gi\|206708164, gi... - gi\|207856361\|ref\|YP_002243012.1\| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica sub... gi\|205271958, gi... - gi\|205352177\|ref\|YP_002225978.1\| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica sub... gi\|16764330, gi\|... - gi\|16764330\|ref\|NP_459945.1\| pyruvate formate lyase-activating enzyme 1 [Salmonella typhimurium LT2]...	203.0	[0..2]	[246..30]
gi\|56128236, gi\|... - gi\|56413979\|ref\|YP_151054.1\| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. ... gi\|197362902, gi... - gi\|197362902\|ref\|YP_002142539.1\| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica sub...	203.0	[0..2]	[246..21]
gi\|78509139, gi\|... - gi\|78691464\|ref\|ZP_00856079.1\| Calcium-binding EF-hand [Shewanella sp. MR-7], gi\|78509139\|gb\|EAP2254...	203.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIGRIHSF ESCGTVDGPG IRFIVFLQGC LFRCKYCHNR DTWDTHTGRE VTVEEIIKEA  60
   61 KSYRHFMNAS GGGITCSGGE AMLQPEFVRD FFRAAKAEGI HTCLDTNGYV RKFTPVIDEV 120
  121 LEVTDLVMLD IKQMDDEIHQ DLIGVSNKRT LDFARYLHQI GQKTWLRYVV VPGYTDDEAS 180
  181 AHQLGEFIKD MENIEKIELL PYHKLGAHKW EAMGEEYPLE GVNPPSKETM DKIVAILEQY 240
  241 HSNVKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2fb2A
Description:	No description for 2fb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits