YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123982550, gi...
Organism:	synthetic construct
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982550, gi....

Description	E-value	Query Range	Subject Range
gi\|109067409 - gi\|109067409\|ref\|XP_001089871.1\| PREDICTED: tachykinin, precursor 1 (substance K, substance P, neuro...	1.0E-64	[1..129]	[1..129]
gi\|73975838 - gi\|73975838\|ref\|XP_850435.1\| PREDICTED: similar to Protachykinin 1 precursor (PPT) isoform 3 [Canis ...	2.0E-64	[1..129]	[1..129]
gi\|62897475 - gi\|62897475\|dbj\|BAD96677.1\| tachykinin 1 isoform beta precursor variant [Homo sapiens]	3.0E-64	[1..129]	[1..129]
TKN1_RAT - Protachykinin-1 OS=Rattus norvegicus GN=Tac1 PE=2 SV=2	4.0E-64	[1..129]	[1..129]
gi\|114614668 - gi\|114614668\|ref\|XP_001171112.1\| PREDICTED: tachykinin 1 isoform 4 [Pan troglodytes]	1.0E-63	[1..129]	[1..129]
gi\|4454350 - gi\|4454350\|emb\|CAA90649.1\| beta preprotachykinin I [Tupaia belangeri]	3.0E-63	[1..129]	[1..129]
TKN1_MESAU - Protachykinin-1 OS=Mesocricetus auratus GN=TAC1 PE=2 SV=1	6.0E-63	[1..129]	[1..129]
TKN1_MOUSE - Protachykinin-1 OS=Mus musculus GN=Tac1 PE=2 SV=1	7.0E-63	[1..129]	[1..129]
TKN1_BOVIN - Protachykinin-1 OS=Bos taurus GN=TAC1 PE=1 SV=2	2.0E-62	[1..129]	[1..129]
gi\|4454091 - gi\|4454091\|emb\|CAA90647.1\| beta preprotachykinin I [Cavia porcellus]	5.0E-62	[1..129]	[1..129]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVALAVF FLVSTQLFAE EIGANDDLNY WSDWYDSDQI KEELPEPFEH LLQRIARRPK  60
   61 PQQFFGLMGK RDADSSIEKQ VALLKALYGH GQISHKRHKT DSFVGLMGKR ALNSVAYERS 120
  121 AMQNYERRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits