YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62179300, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62179300, gi|....

Description	E-value	Query Range	Subject Range
gi\|253972681, gi... - gi\|254160780\|ref\|YP_003043888.1\| conserved metal-binding protein [Escherichia coli B str. REL606], g... gi\|253325364, gi... - gi\|254287568\|ref\|YP_003053316.1\| conserved metal-binding protein [Escherichia coli BL21(DE3)], gi\|25... gi\|194439245, gi... - gi\|83585358\|ref\|ZP_00924005.1\| COG0327: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|242376472, gi... - gi\|251784199\|ref\|YP_002998503.1\| hypothetical protein B21_00659 [Escherichia coli BL21], gi\|24237647...	1.0E-91	[1..247]	[1..247]
gi\|110804660, gi... - gi\|110804660\|ref\|YP_688180.1\| putative hydrolase-oxidase [Shigella flexneri 5 str. 8401], gi\|1106142... gi\|30062125, gi\|... - gi\|30062125\|ref\|NP_836296.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 2457T], gi\|300403... gi\|24050829, gi\|... - gi\|24112012\|ref\|NP_706522.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 301], gi\|24050829...	2.0E-91	[1..247]	[1..247]
gi\|157157712, gi... - gi\|75189731\|ref\|ZP_00702998.1\| COG0327: Uncharacterized conserved protein [Escherichia coli E24377A]...	2.0E-91	[1..247]	[1..247]
gi\|15800413, gi\|... - gi\|15800413\|ref\|NP_286425.1\| putative hydrolase-oxidase [Escherichia coli O157:H7 EDL933], gi\|125136... YBGI_ECOLI - UPF0135 protein ybgI - Escherichia coli GCH1L_ECOL6 - GTP cyclohydrolase 1 type 2 homolog OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... EG13305 - NIF3 family metal-binding protein / Conserved metal-binding protein, NIF3 family, function unknown GCH1L_ECO57 - GTP cyclohydrolase 1 type 2 homolog OS=Escherichia coli O157:H7 GN=ybgI PE=3 SV=1 gi\|209162252, gi... - gi\|209400852\|ref\|YP_002269333.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|209911219, gi... - gi\|209917960\|ref\|YP_002292044.1\| putative hydrolase-oxidase [Escherichia coli SE11], gi\|209911219\|db... gi\|215263805, gi... - gi\|215485733\|ref\|YP_002328164.1\| putative hydrolase-oxidase [Escherichia coli O127:H6 str. E2348/69]... EG13305 - NIF3 family metal-binding protein / Conserved metal-binding protein, NIF3 family, function unknown gi\|217325832, gi... - gi\|217325832\|ref\|ZP_03441916.1\| NIF3 family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|42543092\|pdb\|... - Chain D, Structural Genomics, Ybgi Protein, Unknown Function, Chain E, Structural Genomics, Ybgi Pro... gi\|218553237, gi... - gi\|218553237\|ref\|YP_002386150.1\| putative hydrolase-oxidase [Escherichia coli IAI1], gi\|218360005\|em... gi\|218364399, gi... - gi\|218557630\|ref\|YP_002390543.1\| putative hydrolase-oxidase [Escherichia coli S88], gi\|218364399\|emb... gi\|218426071, gi... - gi\|218688507\|ref\|YP_002396719.1\| putative hydrolase-oxidase [Escherichia coli ED1a], gi\|218426071\|em... gi\|218694133, gi... - gi\|218694133\|ref\|YP_002401800.1\| putative hydrolase-oxidase [Escherichia coli 55989], gi\|218350865\|e... gi\|168801382, gi... - gi\|189376484\|gb\|EDU94900.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC508], gi\|168801382\|... gi\|170020945, gi... - gi\|170020945\|ref\|YP_001725899.1\| putative hydrolase-oxidase [Escherichia coli ATCC 8739], gi\|1697558... gi\|169888212, gi... - gi\|170080377\|ref\|YP_001729697.1\| metal-binding hydrolase-oxidase [Escherichia coli str. K-12 substr.... gi\|170520679, gi... - gi\|170682961\|ref\|YP_001742814.1\| NIF3 family protein [Escherichia coli SMS-3-5], gi\|170520679\|gb\|ACB... gi\|195939051 - gi\|195939051\|ref\|ZP_03084433.1\| putative hydrolase-oxidase [Escherichia coli O157:H7 str. EC4024] gi\|208728180, gi... - gi\|208808379\|ref\|ZP_03250716.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|208815861, gi... - gi\|208815861\|ref\|ZP_03257040.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208737230, gi... - gi\|208823037\|ref\|ZP_03263355.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|218704027, gi... - gi\|218704027\|ref\|YP_002411546.1\| putative hydrolase-oxidase [Escherichia coli UMN026], gi\|218431124\|... gi\|75209722, gi\|... - gi\|75209722\|ref\|ZP_00709930.1\| COG0327: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|75229657, gi\|... - gi\|75229657\|ref\|ZP_00716194.1\| COG0327: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193070664, gi... - gi\|75234512\|ref\|ZP_00718859.1\| COG0327: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|193065545, gi... - gi\|75256419\|ref\|ZP_00728077.1\| COG0327: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188491915, gi... - gi\|75511597\|ref\|ZP_00734248.1\| COG0327: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|81244550, gi\|... - gi\|82543139\|ref\|YP_407086.1\| putative hydrolase-oxidase [Shigella boydii Sb227], gi\|81244550\|gb\|ABB6... gi\|89107568, gi\|... - gi\|89107568\|ref\|AP_001348.1\| conserved metal-binding protein [Escherichia coli str. K-12 substr. W31... gi\|91071320, gi\|... - gi\|91209746\|ref\|YP_539732.1\| putative hydrolase-oxidase [Escherichia coli UTI89], gi\|91071320\|gb\|ABE... gi\|187430792, gi... - gi\|75175909\|ref\|ZP_00696096.1\| COG0327: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|157160190, gi... - gi\|75194869\|ref\|ZP_00704939.1\| COG0327: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|188015211, gi... - gi\|188015211\|gb\|EDU53333.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4113], gi\|168750640... gi\|254591256, gi... - gi\|254791856\|ref\|YP_003076693.1\| metal-binding predicted hydrolase-oxidase [Escherichia coli O157:H7... gi\|168757161, gi... - gi\|189355794\|gb\|EDU74213.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4401], gi\|168757161... gi\|238860257, gi... - gi\|238899975\|ref\|YP_002925771.1\| conserved metal-binding protein [Escherichia coli BW2952], gi\|23886... gi\|189365925, gi... - gi\|189365925\|gb\|EDU84341.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4501], gi\|168763989... gi\|226898536, gi... - gi\|237707326\|ref\|ZP_04537807.1\| NIF3 family protein [Escherichia sp. 3_2_53FAA], gi\|226898536\|gb\|EEH... gi\|13360193, gi\|... - gi\|15829989\|ref\|NP_308762.1\| putative hydrolase-oxidase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|168767149, gi... - gi\|189363426\|gb\|EDU81845.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4486], gi\|168767149... gi\|227838407, gi... - gi\|227884321\|ref\|ZP_04002126.1\| hydrolase-oxidase [Escherichia coli 83972], gi\|227838407\|gb\|EEJ48873... gi\|168777034, gi... - gi\|187767664\|gb\|EDU31508.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4196], gi\|168777034... gi\|189002799, gi... - gi\|189002799\|gb\|EDU71785.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC4076], gi\|168779192... gi\|168786862, gi... - gi\|189373117\|gb\|EDU91533.1\| NIF3 family protein [Escherichia coli O157:H7 str. EC869], gi\|168786862\|... gi\|115512031, gi... - gi\|117622907\|ref\|YP_851820.1\| putative hydrolase-oxidase [Escherichia coli APEC O1], gi\|115512031\|gb... gi\|124501528, gi... - gi\|124526834\|ref\|ZP_01698716.1\| protein of unknown function DUF34 [Escherichia coli B], gi\|124501528... YBGI_ECOL6 - UPF0135 protein ybgI OS=Escherichia coli O6 GN=ybgI PE=3 SV=1	3.0E-91	[1..247]	[1..247]
gi\|50120289, gi\|... - gi\|50120289\|ref\|YP_049456.1\| putative hydrolase-oxidase [Pectobacterium atrosepticum SCRI1043], gi\|4...	4.0E-91	[1..247]	[1..247]
gi\|191174059, gi... - gi\|75237368\|ref\|ZP_00721410.1\| COG0327: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110342512, gi... - gi\|110640920\|ref\|YP_668648.1\| putative hydrolase-oxidase [Escherichia coli 536], gi\|110342512\|gb\|ABG...	4.0E-91	[1..247]	[1..247]
gi\|74311235, gi\|... - gi\|74311235\|ref\|YP_309654.1\| putative hydrolase-oxidase [Shigella sonnei Ss046], gi\|73854712\|gb\|AAZ8...	5.0E-91	[1..247]	[1..247]
gi\|81240124, gi\|... - gi\|82775976\|ref\|YP_402323.1\| putative hydrolase-oxidase [Shigella dysenteriae Sd197], gi\|81240124\|gb...	2.0E-90	[1..247]	[1..247]
gi\|42543087, gi\|... - gi\|42543087\|pdb\|1NMO\|F Chain F, Structural Genomics, Protein Ybgi, Unknown Function, gi\|42543086\|pdb...	3.0E-89	[2..247]	[2..247]
gi\|170717213, gi... - gi\|32030440\|ref\|ZP_00133290.1\| COG0327: Uncharacterized conserved protein [Haemophilus somnus 2336],...	8.0E-86	[1..247]	[5..255]

Back

Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTELEQLI NDKLNSAAIS DYAPNGLQVE GKETVQKIVT GVTASQALLD EAVRLQADAV  60
   61 IVHHGYFWKG ESPVIRGMKR RRLKTLLAND INLYGWHLPL DAHPELGNNA QLAALLGITV 120
  121 KGEIEPLVPW GELSMPVPGL ELASWIEARL GRKPLWCGDT GPENVQRVAW CTGGGQSFID 180
  181 SAARFGVDAF ITGEVSEQTI HSAREQGLHF YAAGHHATER GGIRALSEWL NENTALDVTF 240
  241 IDIPNPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1nmoA
Description:	Structural genomics, protein ybgI, unknown function
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits