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View Structure Prediction Details

Protein: gi|61360999, gi|...
Organism: synthetic construct
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61360999, gi|....

Description E-value Query
Range
Subject
Range
SLBP_MOUSE - Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1
413.0 [0..1] [270..1]
gi|189442753, gi... - gi|195976798|ref|NP_001124460.1| stem-loop binding protein [Rattus norvegicus], gi|189442753|gb|AAI6...
408.0 [0..1] [270..1]
gi|114592841 - gi|114592841|ref|XP_001144566.1| PREDICTED: histone stem-loop binding protein isoform 3 [Pan troglod...
392.0 [0..1] [270..1]
gi|73951400 - gi|73951400|ref|XP_545928.2| PREDICTED: similar to stem-loop binding protein isoform 4 [Canis famili...
386.0 [0..1] [270..1]
gi|114053069, gi... - gi|82571711|gb|AAI10147.1| Histone stem loop binding protein [Bos taurus], gi|114053069|ref|NP_00103...
353.0 [0..1] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRPRSPPR HQSRCDGDAS PPSPARWSLG RKRRADGRRW RPEDAEEAEH RGAERRPESF  60
   61 TTPEGPKPRS RCSDWASAVE EDEMRTRVNK EMARYKRKLL INDFGRERKS SSGSSDSKES 120
  121 MST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPADFETDES VLMRRQKQIN YGKNTIAYDR YIKEVPRHLR QPGIHPKTPN KFKKYSRRSW  60
   61 DQQIKLWKVA LHFWDPPAEE GCDLQEIHPV DLESAESSSE PQTSSQDDFD VYSGTPTKVR 120
  121 HMDSQVEDEF DLEACLTEPL RDFSAMS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle