YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|77634886, gi\|...
Organism:	Yersinia pestis Angola
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77634886, gi|....

Description	E-value	Query Range	Subject Range
gi\|152961914, gi... - gi\|77631503\|ref\|ZP_00794089.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	2.0E-44	[1..250]	[1..250]
gi\|40804950 - gi\|40804950\|gb\|AAR91743.1\| PhnP [Pseudomonas stutzeri]	9.0E-43	[1..247]	[1..249]
gi\|77978606 - gi\|77978606\|ref\|ZP_00834033.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	3.0E-42	[1..250]	[1..250]
gi\|77974046 - gi\|77974046\|ref\|ZP_00829589.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	4.0E-42	[1..250]	[1..250]
gi\|71557968, gi\|... - gi\|71737415\|ref\|YP_275109.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	9.0E-42	[1..245]	[1..247]
gi\|124262218, gi... - gi\|124263006\|ref\|YP_001023476.1\| carbon-phosphorus lyase complex accessory protein [Methylibium petr... gi\|47572359 - gi\|47572359\|ref\|ZP_00242403.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	1.0E-41	[1..249]	[1..251]
tr\|Q882Q8\|Q882Q8... - Phosphonate metabolism protein, PhnP OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_256... gi\|28869758, gi\|... - gi\|28869758\|ref\|NP_792377.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	1.0E-41	[1..247]	[1..249]
gi\|77958815 - gi\|77958815\|ref\|ZP_00822843.1\| COG1235: Metal-dependent hydrolases of the beta-lactamase superfamily...	6.0E-41	[1..247]	[1..247]
gi\|63256206, gi\|... - gi\|66045499\|ref\|YP_235340.1\| carbon-phosphorus lyase complex accessory protein [Pseudomonas syringae...	1.0E-40	[1..247]	[1..249]
gi\|152985004, gi... - gi\|94413480\|ref\|ZP_01293364.1\| hypothetical protein PaerP_01004771 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-40	[1..249]	[1..256]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTLLGTGC AQQVPVFGCD CVICTQASVD PARRRKPCSA MLYYQGETTL IDAGLPTLDQ  60
   61 QFRAGEIQRF LLTHYHMDHV QGLFPLRWGC GNKIPVYGPP DLDGCDDLFK HPGILDFRPP 120
  121 LTAFQPLQFG ELRVTPVPLV HSKITFGYLL QSPNRAIAYL TDTVGLSADS ALFLASKSID 180
  181 LLVLDCSHAP QSPPPRNHND VTMALAIRDL LMPEETLLTH ASHQLDRWLL NNSLPTGVSV 240
  241 AYDNQTVTLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1y44A
Description:	Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31184084417389	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: