YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|68559756, gi\|...
Organism:	Cupriavidus metallidurans CH34
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|68559756, gi|....

Description	E-value	Query Range	Subject Range
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	290.0	[0..2]	[286..1]
gi\|53759202, gi\|... - gi\|91776577\|ref\|YP_546333.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Me...	289.0	[0..5]	[286..6]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	289.0	[0..2]	[286..1]
gi\|69163170, gi\|... - gi\|69953987\|ref\|ZP_00640869.1\| Prepilin peptidase [Shewanella frigidimarina NCIMB 400], gi\|69163170\|...	287.0	[0..3]	[286..6]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	283.0	[0..3]	[286..15]
gi\|109701928, gi... - gi\|76795128\|ref\|ZP_00777565.1\| Prepilin peptidase [Pseudoalteromonas atlantica T6c], gi\|76589596\|gb\|...	282.0	[0..2]	[286..1]
gi\|71735543, gi\|... - gi\|71735543\|ref\|YP_273100.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseol...	282.0	[0..3]	[286..1]
gi\|78690767, gi\|... - gi\|78690767\|ref\|ZP_00855406.1\| Prepilin peptidase [Shewanella sp. MR-7], gi\|78509823\|gb\|EAP23206.1\| ...	281.0	[0..3]	[286..6]
gi\|28899300, gi\|... - gi\|28899300\|ref\|NP_798905.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio... gi\|28807524 - gi\|28807524\|dbj\|BAC60789.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio ...	280.0	[0..6]	[286..1]
gi\|207088242 - gi\|207088242\|gb\|EDZ65514.1\| Bacterial Peptidase A24 N-terminal domain family [Nitrosococcus oceani A... gi\|224408588, gi... - gi\|254435131\|ref\|ZP_05048638.1\| Bacterial Peptidase A24 N-terminal domain family [Nitrosococcus ocea... gi\|76882157, gi\|... - gi\|77163843\|ref\|YP_342368.1\| prepilin peptidase [Nitrosococcus oceani ATCC 19707], gi\|76882157\|gb\|AB...	280.0	[0..3]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVLSSLAA LPPAFLIVAA GVVGLMVGSF LNVVIHRLPK MMEYDEANYI AEIRGEPLPH  60
   61 PERYNLMVPR SACPKCGHQI APWENIPVIS YLFLRGRCKA CKTPIGIRYP LVELITAALS 120
  121 ALAMWHFG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.552842
Match:	PF06750.5
Description:	No description for PF06750.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTAQALAAIV MTWSLVALFM IDADTQLLPD QITLPLLWLG LLLNLQGLFA PLADAVIGAA  60
   61 AGYLLLWSVY WLYKLVRGRE GMGHGDFKLM AALGAWFGWQ ALPALILMSS VVGAVLGGAM 120
  121 LVFRRKSSDT TFPFGPYIVG AGLIVLFFGA DVLPLTLVAG H

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.318759
Match:	PF01478.10
Description:	No description for PF01478.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits