YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124000391, gi...
Organism:	synthetic construct
Length:	417 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000391, gi....

Description	E-value	Query Range	Subject Range
gi\|89272937, gi\|... - gi\|89272937\|emb\|CAJ82972.1\| creatine kinase, mitochondrial 1 [Xenopus tropicalis], gi\|49899846\|gb\|AA...	0.0	[1..417]	[1..417]
gi\|148222749, gi... - gi\|28175289\|gb\|AAH45123.1\| Ckmt1-prov protein [Xenopus laevis], gi\|148222749\|ref\|NP_001080463.1\| cre...	0.0	[1..417]	[1..418]
KCRU_CHICK - Creatine kinase U-type, mitochondrial OS=Gallus gallus GN=CKMT1 PE=1 SV=1	0.0	[1..417]	[1..417]
KCRU_MOUSE - Creatine kinase U-type, mitochondrial OS=Mus musculus GN=Ckmt1 PE=1 SV=1	0.0	[1..417]	[1..418]
gi\|47228508 - gi\|47228508\|emb\|CAG05328.1\| unnamed protein product [Tetraodon nigroviridis]	0.0	[1..416]	[1..415]
gi\|86371674, gi\|... - gi\|86371674\|gb\|ABC94909.1\| mitochondrial creatine kinase 2 [Sus scrofa], gi\|113205654\|ref\|NP_0010380...	0.0	[1..415]	[1..416]

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Predicted Domain #1

Region A:
Residues: [1-417]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPFSRLLS ARPGLRLLAL AGAGSLAAGF LLRPEPVRAA SERRRLYPPS AEYPDLRKHN  60
   61 NCMASHLTPA VYARLCDKTT PTGWTLDQCI QTGVDNPGHP FIKTVGMVAG DEETYEVFAD 120
  121 LFDPVIQERH NGYDPRTMKH TTDLDASKIR SGYFDERYVL SSRVRTGRSI RGLSLPPACT 180
  181 RAERREVERV VVDALSGLKG DLAGRYYRLS EMTEAEQQQL IDDHFLFDKP VSPLLTAAGM 240
  241 ARDWPDARGI WHNNEKSFLI WVNEEDHTRV ISMEKGGNMK RVFERFCRGL KEVERLIQER 300
  301 GWEFMWNERL GYILTCPSNL GTGLRAGVHI KLPLLSKDSR FPKILENLRL QKRGTGGVDT 360
  361 AATGGVFDIS NLDRLGKSEV ELVQLVIDGV NYLIDCERRL ERGQDIRIPT PVIHTKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1crkA
Description:	Creatine kinase, N-domain; Creatine kinase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
creatine kinase activity	5.87424995551394	bayes_pls_golite062009
ligase activity	1.87132312522382	bayes_pls_golite062009
kinase activity	1.6369709251542	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.55442882643769	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
binding	0.996233987521931	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.978825607534211	bayes_pls_golite062009
ammonia ligase activity	0.870745932814662	bayes_pls_golite062009
transferase activity	0.844166655291027	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	0.525598422874668	bayes_pls_golite062009
protein binding	0.133141177821479	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: