YRC Public Data Repository - Protein Structure Prediction

Protein:	RLMN_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLMN_SALPA.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=yfgB] [protein=hypothetical protein] [protein_id=YP_005238624.1] [location=complement(2710249.... gi\|205329931, gi... - gi\|205329931\|gb\|EDZ16695.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica sero... RLMN_SALTY - Ribosomal RNA large subunit methyltransferase N OS=Salmonella typhimurium GN=rlmN PE=3 SV=1 gi\|197241296, gi... - gi\|197263041\|ref\|ZP_03163115.1\| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica ... RLMN_SALTY - Dual-specificity RNA methyltransferase RlmN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... RLMN_SALTY - Ribosomal RNA large subunit methyltransferase N OS=Salmonella typhimurium GN=rlmN PE=3 SV=1	0.0	[1..388]	[1..388]
gi\|83570737, gi\|... - gi\|83570737\|ref\|ZP_00922180.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Shigella dysenteriae 10...	0.0	[1..388]	[1..384]
gi\|1799916, gi\|8... - gi\|89109323\|ref\|AP_003103.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|179... EG12401 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent / 23S rRNA m(2)A2... RLMN_ECOUT - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain UTI89 / UPEC) GN=rlmN PE=3 S... RLMN_ECOL5 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rl... RLMN_SHIBS - Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii serotype 4 (strain Sb227) GN=rlmN PE=... RLMN_ECOK1 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O1:K1 / APEC GN=rlmN PE=3 SV=1 RLMN_ECOSM - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rlmN PE=... RLMN_SHIDS - Dual-specificity RNA methyltransferase RlmN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rlm... gi\|124531245, gi... - gi\|124531245\|ref\|ZP_01701587.1\| radical SAM enzyme, Cfr family [Escherichia coli B], gi\|124498691\|gb... RLMN_ECOLC - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... RLMN_SHISS - Dual-specificity RNA methyltransferase RlmN OS=Shigella sonnei (strain Ss046) GN=rlmN PE=3 SV=1 RLMN_ECODH - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain K12 / DH10B) GN=rlmN PE=3 SV... RLMN_ECOSE - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain SE11) GN=rlmN PE=3 SV=1 RLMN_ECO27 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... RLMN_ECO8A - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O8 (strain IAI1) GN=rlmN PE=3 SV=1 RLMN_ECO45 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rlmN ... gi\|194427328, gi... - gi\|75211483\|ref\|ZP_00711573.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli B171],... RLMN_ECO24 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=... RLMN_SHIB3 - Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5... YFGB_ECOLI - UPF0063 protein yfgB - Escherichia coli gi\|194437563, gi... - gi\|83586834\|ref\|ZP_00925465.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli 101-1]... gi\|75515856, gi\|... - gi\|75515856\|ref\|ZP_00737991.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli 53638]... gi\|193064109, gi... - gi\|75257941\|ref\|ZP_00729415.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli E22], ... gi\|191172618, gi... - gi\|75240458\|ref\|ZP_00724392.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli F11], ... gi\|191167679, gi... - gi\|75229151\|ref\|ZP_00715723.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli B7A], ... RLMN_ECO81 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O81 (strain ED1a) GN=rlmN PE=3 SV=1 RLMN_ECO55 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain 55989 / EAEC) GN=rlmN PE=3 S... RLMN_ECO7I - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rlmN... gi\|254162491, gi... - gi\|254162491\|ref\|YP_003045599.1\| predicted enzyme [Escherichia coli B str. REL606], gi\|253974392\|gb\|... gi\|253772589, gi... - gi\|254289252\|ref\|YP_003055000.1\| predicted enzyme [Escherichia coli BL21(DE3)], gi\|253978559\|gb\|ACT4... gi\|242378115, gi... - gi\|251785842\|ref\|YP_003000146.1\| hypothetical protein B21_02371 [Escherichia coli BL21], gi\|24237811... RLMN_ECOBW - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rl... gi\|237705027, gi... - gi\|237705027\|ref\|ZP_04535508.1\| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2... EG12401 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent / 23S rRNA m(2)A2... sp\|B7UGW3\|RLMN_ECO27 - Ribosomal RNA large subunit methyltransferase N OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	0.0	[1..388]	[1..384]
RLMN_ECOHS - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O9:H4 (strain HS) GN=rlmN PE=3 SV=1	0.0	[1..388]	[1..384]
RLMN_ECOL6 - Ribosomal RNA large subunit methyltransferase N OS=Escherichia coli O6 GN=rlmN PE=3 SV=1 RLMN_ECOL6 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|227835902, gi... - gi\|227887552\|ref\|ZP_04005357.1\| Fe-S-cluster oxidoreductase [Escherichia coli 83972], gi\|227835902\|g...	0.0	[1..388]	[1..384]
gi\|193068396, gi... - gi\|75237737\|ref\|ZP_00721753.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Escherichia coli E11001...	0.0	[1..388]	[1..384]
gi\|13362849, gi\|... - gi\|15832633\|ref\|NP_311406.1\| hypothetical protein ECs3379 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208820776, gi... - gi\|208820776\|ref\|ZP_03261096.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042... RLMN_ECO5E - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rl... gi\|217327135, gi... - gi\|217327135\|ref\|ZP_03443218.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW1458... gi\|189378598, gi... - gi\|189378598\|gb\|EDU97014.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508], gi... gi\|195936659 - gi\|195936659\|ref\|ZP_03082041.1\| hypothetical protein EscherichcoliO157_09385 [Escherichia coli O157:... gi\|208728432, gi... - gi\|208808631\|ref\|ZP_03250968.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206... gi\|208735657, gi... - gi\|208814380\|ref\|ZP_03255709.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045... gi\|168768609, gi... - gi\|189362276\|gb\|EDU80695.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486], g... gi\|168773569, gi... - gi\|187770632\|gb\|EDU34476.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196], g... gi\|189003147, gi... - gi\|189003147\|gb\|EDU72133.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076], g... gi\|168787863, gi... - gi\|189372335\|gb\|EDU90751.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869], gi... gi\|168748424, gi... - gi\|188017093\|gb\|EDU55215.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113], g... gi\|189356574, gi... - gi\|189356574\|gb\|EDU74993.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401], g... gi\|189368421, gi... - gi\|189368421\|gb\|EDU86837.1\| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501], g... gi\|209763364, gi... - pir\|\|C91051 hypothetical protein ECs3379 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254593863, gi... - gi\|254794463\|ref\|YP_003079300.1\| predicted enzyme [Escherichia coli O157:H7 str. TW14359], gi\|254593... RLMN_ECO57 - Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O157:H7 GN=rlmN PE=3 SV=3	0.0	[1..388]	[1..384]
RLMN_YERPG - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rlmN P... RLMN_YERPA - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rlmN ... RLMN_YERPN - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rlmN... gi\|165926002, gi... - gi\|165926002\|ref\|ZP_02221834.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orien... gi\|166206232, gi... - gi\|166212301\|ref\|ZP_02238336.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiq... gi\|165992776, gi... - gi\|166008394\|ref\|ZP_02229292.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiq... gi\|167421243, gi... - gi\|167421243\|ref\|ZP_02312996.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orien... gi\|89103473, gi\|... - gi\|89103473\|ref\|ZP_01176049.1\| COG0820: Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar ... gi\|167052045, gi... - gi\|167399541\|ref\|ZP_02305065.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiq... gi\|149291755, gi... - gi\|149365342\|ref\|ZP_01887377.1\| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125], gi\|149291... RLMN_YERPE - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pestis GN=rlmN PE=3 SV=1 RLMN_YERPP - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pestis (strain Pestoides F) GN=rlmN PE=3 SV=... gi\|45437385, gi\|... - gi\|45442520\|ref\|NP_994059.1\| hypothetical protein YP_2748 [Yersinia pestis biovar Microtus str. 9100... gi\|21958119, gi\|... - gi\|22125249\|ref\|NP_668672.1\| hypothetical protein y1350 [Yersinia pestis KIM], gi\|21958119\|gb\|AAM849... gi\|229694828, gi... - gi\|229838462\|ref\|ZP_04458621.1\| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|16123074, gi\|... - gi\|218929942\|ref\|YP_002347817.1\| hypothetical protein YPO2882 [Yersinia pestis CO92], gi\|16123074\|re... gi\|229701925, gi... - gi\|229895163\|ref\|ZP_04510339.1\| predicted enzyme [Yersinia pestis Pestoides A], gi\|229701925\|gb\|EEO8... RLMN_YERPS - Dual-specificity RNA methyltransferase RlmN OS=Yersinia pseudotuberculosis serotype I (strain IP3295... gi\|229687974, gi... - gi\|229899029\|ref\|ZP_04514173.1\| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195],... RLMN_YERPS - Ribosomal RNA large subunit methyltransferase N OS=Yersinia pseudotuberculosis GN=rlmN PE=3 SV=1 gi\|167423347, gi... - gi\|167423347\|ref\|ZP_02315100.1\| radical SAM domain protein, Cfr family [Yersinia pestis biovar Media...	0.0	[1..388]	[1..398]
gi\|24113846, gi\|... - gi\|24113846\|ref\|NP_708356.1\| hypothetical protein SF2563 [Shigella flexneri 2a str. 301], gi\|2405293... gi\|30063909, gi\|... - gi\|30063909\|ref\|NP_838080.1\| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T], gi\|300421... RLMN_SHIFL - Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri GN=rlmN PE=3 SV=1 RLMN_SHIF8 - Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri serotype 5b (strain 8401) GN=rlmN P...	0.0	[1..388]	[1..384]
gi\|15803040, gi\|... - gi\|15803040\|ref\|NP_289070.1\| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933], gi\|125169... gi\|25320177 - pir\|\|G85895 hypothetical protein yfgB [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	0.0	[1..388]	[1..384]

Back

Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQIVTPES STPVVLNNET KINLLDLNRQ QMREFFKNLG EKPFRADQVM KWMYHYCCDN  60
   61 FDEMTDINKV LRGKLKEVAE IRAPEVVEEQ RSSDGTIKWA IAVGDQRVET VYIPEDDRAT 120
  121 LCVSSQVGCA LECKFCSTAQ QGFNRNLRVS EIIGQVWRAA KIVGAAKVTG QRPITNVVMM 180
  181 GMGEPLLNLT NVVPAMEIML DDFGFGLSKR RVTLSTSGVV PALDKLGDMI DVALAISLHA 240
  241 PNDTIRDEIV PINKKYNIET FLGAVRRYLE KSNANQGRVT IEYVMLDHVN DGTEHAHQLA 300
  301 ELLKETPCKI NLIPWNPFPG APYGRSSNSR IDRFSKVLMS YGFTTIVRKT RGDDIDAACG 360
  361 QLAGDVIDRT KRTLRKRMQG EVIDIKAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2a5hA
Description:	2.1 Angstrom X-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale SB4, with Michaelis analog (L-alpha-lysine external aldimine form of pyridoxal-5'-phosphate).
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits