YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62180372, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	57 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62180372, gi|....

Description	E-value	Query Range	Subject Range
gi\|218368346, gi... - gi\|218561577\|ref\|YP_002394490.1\| hypothetical protein ECS88_5024 [Escherichia coli S88], gi\|21836834... gi\|26249018, gi\|... - gi\|26249018\|ref\|NP_755058.1\| GnsB protein [Escherichia coli CFT073], gi\|26109425\|gb\|AAN81628.1\|AE016...	3.0E-15	[1..57]	[32..88]
gi\|197362197, gi... - gi\|197362197\|ref\|YP_002141834.1\| hypothetical protein SSPA0993 [Salmonella enterica subsp. enterica ... gi\|56413272, gi\|... - gi\|56413272\|ref\|YP_150347.1\| hypothetical protein SPA1064 [Salmonella enterica subsp. enterica serov...	4.0E-13	[1..57]	[1..57]
gi\|1787832, gi\|1... - gb\|AAC74623.1\| GnsB protein; Qin prophage; suppressor of cold/temperature-sensitive mutants, affects... gi\|1742549, gi\|7... - gi\|7466192\|pir\|\|A64910 hypothetical protein b1550 - Escherichia coli (strain K-12), dbj\|BAA15253.1\| ...	2.0E-12	[1..57]	[2..58]
GNSB_ECOLI - Protein gnsB - Escherichia coli gi\|218699879, gi... - gi\|218699879\|ref\|YP_002407508.1\| conserved hypothetical protein; Qin prophage [Escherichia coli IAI3... gi\|238863375, gi... - gi\|238900770\|ref\|YP_002926566.1\| Qin prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... gi\|218432149, gi... - gi\|218705052\|ref\|YP_002412571.1\| conserved hypothetical protein; Qin prophage [Escherichia coli UMN0... EG13837 - Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) / Multicopy suppressor of secG(Cs) and ... EG13837 - Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) / Multicopy suppressor of secG(Cs) and ... gi\|169755028, gi... - gi\|170020100\|ref\|YP_001725054.1\| GnsAGnsB family protein [Escherichia coli ATCC 8739], gi\|169755028\|... gi\|170081218, gi... - gi\|170081218\|ref\|YP_001730538.1\| Qin prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|124498157, gi... - gi\|124532152\|ref\|ZP_01702131.1\| GnsAGnsB family protein [Escherichia coli B], gi\|124498157\|gb\|EAY456... gi\|194436589, gi... - gi\|194436589\|ref\|ZP_03068690.1\| conserved domain protein [Escherichia coli 101-1], gi\|194424621\|gb\|E... gi\|85675018, gi\|... - gi\|89108392\|ref\|AP_002172.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|218360880, gi... - gi\|218554112\|ref\|YP_002387025.1\| conserved hypothetical protein; Qin prophage [Escherichia coli IAI1...	2.0E-12	[1..57]	[1..57]
gi\|110614554, gi... - gi\|110805006\|ref\|YP_688526.1\| GnsA protein [Shigella flexneri 5 str. 8401], gi\|110614554\|gb\|ABF03221...	3.0E-12	[1..57]	[1..57]
gi\|24051278, gi\|... - gi\|24112404\|ref\|NP_706914.1\| hypothetical protein SF0993 [Shigella flexneri 2a str. 301], gi\|2405127...	3.0E-12	[1..57]	[1..57]
gi\|18266455 - gi\|18266455\|gb\|AAK63083.1\| YccL-like protein [Salmonella enterica subsp. VII]	4.0E-12	[1..57]	[1..57]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSEELTHKA EEEIAALISK KVAELRKKTG QEVSEIEFAP RETMKGLEGY HVKIKLL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.086186
Match:	PF08178.2
Description:	No description for PF08178.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits